DRSC/TRiP Functional Genomics Resources

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Protein Alignment htl and Pdgfra

DIOPT Version :9

Sequence 1:NP_524394.2 Gene:htl / 42160 FlyBaseID:FBgn0010389 Length:729 Species:Drosophila melanogaster
Sequence 2:NP_001076785.1 Gene:Pdgfra / 18595 MGIID:97530 Length:1089 Species:Mus musculus


Alignment Length:781 Identity:217/781 - (27%)
Similarity:310/781 - (39%) Gaps:256/781 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 FLQTRPS-GSLLTLNCHAL--------GNPEPNITWYRNG----------TVD-----WTRGYGS 151
            |::..|: |.|..:|.|.:        ..|.|.|:|.::.          |.|     .||....
Mouse   314 FVEIEPTFGQLEAVNLHEVREFVVEVQAYPTPRISWLKDNLTLIENLTEITTDVQKSQETRYQSK 378

  Fly   152 LKRNRWTLTMEDLVPGDCGNYTCKVCNSLGCIRHDTQVIVSDRVNHKPILMTGPLNLTLVVNSTG 216
            ||..|   ..|:    |.|:||..|.|     ..|.:....:.....|..:     |.||.:..|
Mouse   379 LKLIR---AKEE----DSGHYTIIVQN-----EDDVKSYTFELSTLVPASI-----LDLVDDHHG 426

  Fly   217 S--------------------MHCKYLSDLTSKKAWIFVPCHGMTNCSNNRSIIAE--------D 253
            |                    |.||::....:..:|..:       .||..:||.|        .
Mouse   427 SGGGQTVRCTAEGTPLPEIDWMICKHIKKCNNDTSWTVL-------ASNVSNIITELPRRGRSTV 484

  Fly   254 KDQLDFVNVRMEQEGWYTCVESNSLGQSNSTAYLRVVRSLHVLEAGVASGSLHSTSFVYIFVFGG 318
            :.::.|..|  |:.....|:..|:|..        |.|.|. |.|......|...:.|.:     
Mouse   485 EGRVSFAKV--EETIAVRCLAKNNLSV--------VARELK-LVAPTLRSELTVAAAVLV----- 533

  Fly   319 LIFIFMTTLFVFYAIRKMKHEKVLKQR-IETVHQWTKKVIIFKPEGGGDSSGSMDTMIMPVVRIQ 382
            |:.|.:.:|.|...|.|.|....::.| ||::          .|:|                   
Mouse   534 LLVIVIVSLIVLVVIWKQKPRYEIRWRVIESI----------SPDG------------------- 569

  Fly   383 KQRTTVLQNGNEPAPFNEY------EFPLDSNWELPRSHLVLGATLGEGAFGRVVMAEVNNAI-- 439
                            :||      :.|.||.||.||..||||..||.||||:||........  
Mouse   570 ----------------HEYIYVDPMQLPYDSRWEFPRDGLVLGRILGSGAFGKVVEGTAYGLSRS 618

  Fly   440 -----VAVKMVKEGHTDDDIASLVREMEVMKIIGRHINIINLLGCCSQNGPLYVIVEYAPHGNLK 499
                 |||||:|......:..:|:.|:::|..:|.|:||:||||.|:::||:|:|.||..:|:|.
Mouse   619 QPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEYCFYGDLV 683

  Fly   500 DFLYKNRPFGRDQDRDSSQPPPSP----------PA------HVI-------------------- 528
            ::|:|||      |...||.|..|          ||      :||                    
Mouse   684 NYLHKNR------DSFMSQHPEKPKKDLDIFGLNPADESTRSYVILSFENNGDYMDMKQADTTQY 742

  Fly   529 ------------------------------------------------TEKDLIKFAHQIARGMD 545
                                                            |..||:.|.:|:||||:
Mouse   743 VPMLERKEVSKYSDIQRSLYDRPASYKKKSMLDSEVKNLLSDDDSEGLTLLDLLSFTYQVARGME 807

  Fly   546 YLASRRCIHRDLAARNVLVSDDYVLKIADFGLARDIQSTDYYRKNTNGRLPIKWMAPESLQEKFY 610
            :|||:.|:||||||||||::...::||.||||||||.....|....:..||:|||||||:.:..|
Mouse   808 FLASKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLY 872

  Fly   611 DSKSDVWSYGILLWEIMTYGQQPYPTIMSAEELYTYLMSGQRMEKPAKCSMNIYILMRQCWHFNA 675
            .:.|||||||||||||.:.|..|||.:|.....|..:.||.||.||...:..:|.:|.|||:...
Mouse   873 TTLSDVWSYGILLWEIFSLGGTPYPGMMVDSTFYNKIKSGYRMAKPDHATSEVYEIMVQCWNSEP 937

  Fly   676 DDRPPFTEIVEYMDKLL--QTKEDY--LDVDIANLDTPPST-----SDEE------EDETDNLQK 725
            :.||.|..:.|.::.||  |.|:.|  :.:|....|.|...     ||..      ::|.|.|:.
Mouse   938 EKRPSFYHLSEIVENLLPGQYKKSYEKIHLDFLKSDHPAVARMRVDSDNAYIGVTYKNEEDKLKD 1002

  Fly   726 W 726
            |
Mouse  1003 W 1003

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
htlNP_524394.2 Ig 112..191 CDD:299845 24/102 (24%)
IG_like 113..191 CDD:214653 24/101 (24%)
IG_like 205..289 CDD:214653 20/111 (18%)
PKc_like 404..692 CDD:304357 136/378 (36%)
STYKc 416..688 CDD:214568 129/362 (36%)
PdgfraNP_001076785.1 Ig_3 28..100 CDD:372822
Ig_PDGFR-alphabeta 228..311 CDD:143269
Ig4_PDGFR 313..413 CDD:143267 25/110 (23%)
Ig_TrkABC_d4 416..497 CDD:143173 17/94 (18%)
PTKc_PDGFR_alpha 555..956 CDD:173653 145/451 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1018..1089
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0200
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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