DRSC/TRiP Functional Genomics Resources

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Protein Alignment htl and igcm-4

DIOPT Version :9

Sequence 1:NP_524394.2 Gene:htl / 42160 FlyBaseID:FBgn0010389 Length:729 Species:Drosophila melanogaster
Sequence 2:NP_508377.1 Gene:igcm-4 / 180518 WormBaseID:WBGene00022418 Length:541 Species:Caenorhabditis elegans


Alignment Length:425 Identity:89/425 - (20%)
Similarity:140/425 - (32%) Gaps:145/425 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 VQVEGRRQMANSQEMIKDHLGARSQNKTPAITNNANQSSTSSADLDDGAADDDDNKADLPVNVSS 99
            |.|..:....||   :||:|          :.:|...|.:...|::.                  
 Worm   122 VHVHDQHDKENS---VKDYL----------VLSNTTASPSWLIDMNS------------------ 155

  Fly   100 KPYWRNPKKMSFLQTRPSGSLLTLNCHALGNPEPNITWYRN--GTVDWTRGYGSLKRNRWTLTME 162
              .||:|.|::      :|..|.|.|.|.|||.|.|.||:|  ...:.|..:.|      |:|:|
 Worm   156 --EWRSPIKIN------TGGKLELRCPAQGNPLPEIRWYQNEMEISEKTHKHVS------TITVE 206

  Fly   163 DLVPGDCGNYTCKVCNSLGCIRHDTQVIVSD-------------RVNHKPILMTGPLNLTLVVNS 214
            .:.....|.|.|.|.|.||.:.....|.|.|             ....:|:: ..|.|:::....
 Worm   207 PVESSHSGVYRCVVENPLGSLSFAFDVSVGDFFDPTTTEATEYQETAMEPVI-DQPYNISVYAGH 270

  Fly   215 TGSMHCKYLSDLTSKKAWI-----------------FVPCHGMT-----NCSNNRSIIAEDKD-- 255
            |....||..|:..:...|:                 .:..:||.     :.....|:..||.|  
 Worm   271 TAQFQCKVKSNENTIIKWLKEVSDPLSIRRKDPNSTVIHVNGMNLLVLDHIQTESSLPQEDMDNI 335

  Fly   256 ---QLDFVNVRMEQEGWYTCVESNSLGQ-SNSTAYLRVVRSLHVLEAGVASGSLHSTSFVYIFVF 316
               :|....|.....|.|.||.:::.|| ...:|.|:|               |.:..|.:.|..
 Worm   336 YTNRLTIHKVDYHHAGKYICVVTSAQGQIVYKSAELKV---------------LSAYDFTFPFKS 385

  Fly   317 GGLIFIF--MTTLFVFYAIRKMKHEKVLKQRIETVHQWTKKVIIFKPEGGGDSSGSMDTMIMPVV 379
            .|.:.:.  :.|||:|..|..:              .|.||        ..:|:...|....|..
 Worm   386 DGFLVLLAVVVTLFIFVVILAI--------------IWLKK--------NQESTSGKDLKPPPPP 428

  Fly   380 RIQKQRTTVLQNGNEPAPFNEYEFPLDSNWELPRS 414
            |:             |.|    ..|.|::|...|:
 Worm   429 RM-------------PPP----AAPQDNDWSSDRT 446

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
htlNP_524394.2 Ig 112..191 CDD:299845 26/80 (33%)
IG_like 113..191 CDD:214653 26/79 (33%)
IG_like 205..289 CDD:214653 23/111 (21%)
PKc_like 404..692 CDD:304357 4/11 (36%)
STYKc 416..688 CDD:214568
igcm-4NP_508377.1 IGc2 52..114 CDD:197706
I-set 159..235 CDD:254352 28/87 (32%)
IGc2 166..225 CDD:197706 23/64 (36%)
IG_like 261..373 CDD:214653 23/111 (21%)
Ig 269..374 CDD:299845 22/119 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0200
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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