DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment htl and Flt3

DIOPT Version :10

Sequence 1:NP_524394.2 Gene:htl / 42160 FlyBaseID:FBgn0010389 Length:729 Species:Drosophila melanogaster
Sequence 2:NP_001402681.1 Gene:Flt3 / 140635 RGDID:61308 Length:1000 Species:Rattus norvegicus


Alignment Length:916 Identity:244/916 - (26%)
Similarity:347/916 - (37%) Gaps:309/916 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 WRASHSTITMTSGSLVVLFLLLSIWQPAVQVEGRRQMANSQEMIKD--------HLGARSQNKTP 63
            |...||::..               ||...::.||.::.:...:.:        |:.:.:.|.|.
  Rat   105 WVFKHSSLGC---------------QPHFDLQNRRIVSMTILNVTETQAGEYLLHIQSEATNHTV 154

  Fly    64 AITNNANQSSTSSADLDDGAADDDDNKADLPVNVSSKPYWRNPKKMSFLQTRPSGSLLTLNCHAL 128
            ..|.|..                     |..:.|..:|        ||.:.....:||   |.:.
  Rat   155 LFTVNVR---------------------DTQLYVLRRP--------SFRKMENQDALL---CVSE 187

  Fly   129 GNPEPNITW-----YRNGTVDWTRGYGSLKRNRWTLTMEDLVPGDCGNYTCKVCNSLGCIRHDTQ 188
            |.|||.:.|     :|    |..|..||....:....:.:|...|   ..|...|:||  |..|:
  Rat   188 GVPEPTVEWVVCSSHR----DSCREEGSAVVKKEEKVLHELFETD---IRCCARNALG--RECTK 243

  Fly   189 VIVSDRVNHKPILMTGPLNLTLVVNSTGSMHCKYLS---------DLTSKKAWIFVPCHG----M 240
            :...| :|..| ..|.| .|.|.|.....:.||.:.         :|.:|     |...|    |
  Rat   244 LFTID-LNQAP-QSTLP-QLFLKVGEPLWIRCKAIHVNHGFGLTWELGNK-----VLEEGSYFEM 300

  Fly   241 TNCSNNRSIIAEDKDQLDFV-NVRMEQEGWYTCVESNSLGQS-----------NST--------- 284
            ::.|.|||:|   :..|.|| :|.....|:|||..|....|:           |:|         
  Rat   301 SSYSTNRSMI---RILLAFVSSVGRNNTGYYTCSSSKHPSQTALVTILEKGFINATSSQEEYEID 362

  Fly   285 ------------AYLRV-------VRSLHVLEAGVASGSLHSTSFV---------YIFVFGGLIF 321
                        ||.::       ..|....::|:..|  :|.|..         ||| .|....
  Rat   363 PYEKFCFSVRFKAYPQIRCKWTFSQTSFPCEQSGLEDG--YSISKFCDHKNNPGEYIF-HGENDD 424

  Fly   322 IFMTTLFVFYAIRKMKHEKVL-------------------------------------------K 343
            ...|.:|:....||   .:||                                           |
  Rat   425 AQFTKMFILNIRRK---PQVLANASASQASCFSDGYPLPNWTWKKCSDKSPNCTEEIPEGVWNKK 486

  Fly   344 QRIETVHQWTKKVIIFKPEGGG---------DSSG-SMDTMIM----PVVRIQK----------- 383
            ...:...||.....:...|.|.         :|.| |.:|:::    |.:.||.           
  Rat   487 ANRKVFGQWVSSSTLNMSEAGRGFLVKCCAYNSMGTSCETILLNSPGPFLFIQDNISFYATIGLC 551

  Fly   384 ----------------------------QRTTVLQNGNEPAPFNEYEFPLDSNWELPRSHLVLGA 420
                                        |.|..|.|......|.:||:  |..||.||.:|..|.
  Rat   552 PPFIVVLTVLICHKYKKQFRYESQLQMIQVTGPLDNEYFYIDFRDYEY--DLKWEFPRENLEFGK 614

  Fly   421 TLGEGAFGRVVMAEVN-------NAIVAVKMVKEGHTDDDIASLVREMEVMKIIGRHINIINLLG 478
            .||.||||||:.|...       :..|||||:||.....:..:|:.|:::|..:|.|.||:||||
  Rat   615 VLGSGAFGRVMNATAYGISKTGVSIQVAVKMLKEKADRCEREALMAELKMMTHLGHHDNIVNLLG 679

  Fly   479 CCSQNGPLYVIVEYAPHGNLKDFL-YKNRPFGRD----------------QDRDSSQPPPS---- 522
            .|:.:||:|:|.||..||:|.::| .|...|.|.                |...:|..|.|    
  Rat   680 ACTLSGPVYLIFEYCCHGDLLNYLRSKREKFHRTWTEIFKEHNFSFYPTFQSHSNSSMPGSREVQ 744

  Fly   523 --PPA---------------------------------HVITEKDLIKFAHQIARGMDYLASRRC 552
              ||.                                 :|:|.:||:.||:|:|:||::|..:.|
  Rat   745 IYPPVDQVSGFNGNSIHSEDEIEYENQKRLEEEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSC 809

  Fly   553 IHRDLAARNVLVSDDYVLKIADFGLARDIQSTDYYRKNTNGRLPIKWMAPESLQEKFYDSKSDVW 617
            :|||||||||||:...|:||.||||||||.|...|....|.|||:||||||||.|..|..|||||
  Rat   810 VHRDLAARNVLVTHGKVVKICDFGLARDILSDSSYVVRGNARLPVKWMAPESLFEGIYTIKSDVW 874

  Fly   618 SYGILLWEIMTYGQQPYPTIMSAEELYTYLMSGQRMEKPAKCSMNIYILMRQCWHFNADDRPPFT 682
            |||||||||.:.|..|||.|......|..:.||.:||:|...:..||.:|:.||.|::..||.|.
  Rat   875 SYGILLWEIFSLGVNPYPGIPVDANFYKLIQSGFKMEQPFYATEEIYFVMQSCWAFDSRKRPSFP 939

  Fly   683 EIVEYM 688
            .:..::
  Rat   940 NLTSFL 945

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
htlNP_524394.2 Ig 101..191 CDD:472250 24/94 (26%)
Ig strand B 121..125 CDD:409353 1/3 (33%)
Ig strand C 134..138 CDD:409353 1/8 (13%)
Ig strand E 157..161 CDD:409353 0/3 (0%)
Ig strand F 171..176 CDD:409353 1/4 (25%)
Ig strand G 184..187 CDD:409353 1/2 (50%)
Ig 200..289 CDD:472250 31/134 (23%)
Ig strand B 216..220 CDD:409353 0/3 (0%)
Ig strand C 229..233 CDD:409353 1/3 (33%)
Ig strand E 255..259 CDD:409353 1/3 (33%)
Ig strand F 269..274 CDD:409353 3/4 (75%)
Ig strand G 282..285 CDD:409353 2/23 (9%)
Protein Kinases, catalytic domain 404..692 CDD:473864 138/348 (40%)
Flt3NP_001402681.1 ig 255..345 CDD:395002 27/98 (28%)
Protein Kinases, catalytic domain 572..949 CDD:473864 145/376 (39%)

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