DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment htl and Csf1r

DIOPT Version :9

Sequence 1:NP_524394.2 Gene:htl / 42160 FlyBaseID:FBgn0010389 Length:729 Species:Drosophila melanogaster
Sequence 2:NP_001032948.2 Gene:Csf1r / 12978 MGIID:1339758 Length:977 Species:Mus musculus


Alignment Length:777 Identity:214/777 - (27%)
Similarity:318/777 - (40%) Gaps:210/777 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 STSSADLDDG------AADDDDNK-ADLPVNVSSKPYWRNPKKMSFLQTRPSGSLLTLNCHALGN 130
            |.::.|..|.      |::|...: |.:...|....|.....:.|.||....|..|.|..||  :
Mouse   264 SLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESAYLNLTSEQSLLQEVSVGDSLILTVHA--D 326

  Fly   131 PEPNITWYRNGTVDWTRGY----------------GSLKRNRWTLTMEDLVPGDCGNYTCKVCNS 179
            ..|:|..|     :||  |                .::.|..:.|.:..:...:.|.|.....|.
Mouse   327 AYPSIQHY-----NWT--YLGPFFEDQRKLEFITQRAIYRYTFKLFLNRVKASEAGQYFLMAQNK 384

  Fly   180 LG--------CIRHDTQVIVSDRVNHKPILMTGPLNLTLVVNSTGSMHCKYLSDLTSKKAWIFVP 236
            .|        .:|:..:|.|:                .:.||.:..:.|...........|  :.
Mouse   385 AGWNNLTFELTLRYPPEVSVT----------------WMPVNGSDVLFCDVSGYPQPSVTW--ME 431

  Fly   237 CHGMTN-CSNNRSIIA------EDKDQLDFVNV---------RMEQEGWYTCVESNSLGQSNSTA 285
            |.|.|: |...:::..      |...|..|..|         .::....|.|...||:|  ||:.
Mouse   432 CRGHTDRCDEAQALQVWNDTHPEVLSQKPFDKVIIQSQLPIGTLKHNMTYFCKTHNSVG--NSSQ 494

  Fly   286 YLRVVRSLHVLEAGVASGSLHSTSFVYIFVFGGLIFIFMTTLFVFYAIRKMKHEKVLKQRIETVH 350
            |.|.| ||.      .|..|...|.....|...:..:.:..|.:...:.|.|.:...:.|.:.:.
Mouse   495 YFRAV-SLG------QSKQLPDESLFTPVVVACMSVMSLLVLLLLLLLYKYKQKPKYQVRWKIIE 552

  Fly   351 QWTKKVIIFKPEGGGDSSGSMDTMIMPVVRIQKQRTTVLQNGNEPAPFNEYEFPLDSNWELPRSH 415
            ::               .|:..|.|.|.                ..|:||       .||.||::
Mouse   553 RY---------------EGNSYTFIDPT----------------QLPYNE-------KWEFPRNN 579

  Fly   416 LVLGATLGEGAFGRVVMAEV-----NNAI--VAVKMVKEGHTDDDIASLVREMEVMKIIGRHINI 473
            |..|.|||.||||:||.|..     .:|:  |||||:|.....|:..:|:.|:::|..:|:|.||
Mouse   580 LQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENI 644

  Fly   474 INLLGCCSQNGPLYVIVEYAPHGNLKDFL-----------------------YKN---------- 505
            :||||.|:..||:.||.||..:|:|.:||                       |||          
Mouse   645 VNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEAMLGPSLSPGQDSEGDSSYKNIHLEKKYVRR 709

  Fly   506 ---------------RP---------FGRDQDRDSSQPPPSPPAHVITEKDLIKFAHQIARGMDY 546
                           ||         |.:|.|:::|:|        :...||:.|:.|:|:||.:
Mouse   710 DSGFSSQGVDTYVEMRPVSTSSSDSFFKQDLDKEASRP--------LELWDLLHFSSQVAQGMAF 766

  Fly   547 LASRRCIHRDLAARNVLVSDDYVLKIADFGLARDIQSTDYYRKNTNGRLPIKWMAPESLQEKFYD 611
            |||:.|||||:||||||::..:|.||.||||||||.:...|....|.|||:|||||||:.:..|.
Mouse   767 LASKNCIHRDVAARNVLLTSGHVAKIGDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFDCVYT 831

  Fly   612 SKSDVWSYGILLWEIMTYGQQPYPTIMSAEELYTYLMSGQRMEKPAKCSMNIYILMRQCWHFNAD 676
            .:|||||||||||||.:.|..|||.|:...:.|..:..|.:|.:|.....|||.:|:.||.....
Mouse   832 VQSDVWSYGILLWEIFSLGLNPYPGILVNNKFYKLVKDGYQMAQPVFAPKNIYSIMQSCWDLEPT 896

  Fly   677 DRPPFTEIVEYMDKLLQTKEDYLDVDIANLDTP---------------PSTSDEEEDETDNL 723
            .||.|.:|...:.:  |.:.:..|.|.|||.:.               .|:..|||..:::|
Mouse   897 RRPTFQQICFLLQE--QARLERRDQDYANLPSSGGSSGSDSGGGSSGGSSSEPEEESSSEHL 956

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
htlNP_524394.2 Ig 112..191 CDD:299845 21/102 (21%)
IG_like 113..191 CDD:214653 20/101 (20%)
IG_like 205..289 CDD:214653 20/99 (20%)
PKc_like 404..692 CDD:304357 133/351 (38%)
STYKc 416..688 CDD:214568 129/335 (39%)
Csf1rNP_001032948.2 ig 25..85 CDD:278476
IG_like 28..101 CDD:214653
IG_like 113..195 CDD:214653
Ig 113..179 CDD:299845
ig 207..293 CDD:278476 6/28 (21%)
IG_like 209..295 CDD:214653 6/30 (20%)
Ig4_SCFR_like 299..398 CDD:143176 21/107 (20%)
IG_like 311..395 CDD:214653 18/92 (20%)
Regulatory juxtamembrane domain. /evidence=ECO:0000250 540..572 8/69 (12%)
PTKc_CSF-1R 541..913 CDD:133237 142/419 (34%)
Pkinase_Tyr 580..904 CDD:285015 128/331 (39%)
Activation loop. /evidence=ECO:0000250 794..816 11/21 (52%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 921..957 8/36 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0200
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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