DRSC/TRiP Functional Genomics Resources

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Protein Alignment htl and epha4

DIOPT Version :10

Sequence 1:NP_524394.2 Gene:htl / 42160 FlyBaseID:FBgn0010389 Length:729 Species:Drosophila melanogaster
Sequence 2:XP_012825631.1 Gene:epha4 / 100216124 XenbaseID:XB-GENE-1015803 Length:986 Species:Xenopus tropicalis


Alignment Length:737 Identity:186/737 - (25%)
Similarity:286/737 - (38%) Gaps:200/737 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 NKTPAITNNANQSSTSSADLDDGAADDDDNKADLP--------------VNVSS-KPYWRNPKKM 109
            :|.|..:....:.|| |...|.|....|.:.|.:|              ||.:| ...|..|:..
 Frog   291 SKCPPHSYALREGST-SCTCDRGYFRADTDPASMPCTRPPSAPQNLISNVNETSVNLEWSPPQNS 354

  Fly   110 SFLQTRPS----------GSLLTLNCHALG-----NPEPNITWYRNGTVDWTRGYGSLKRNRWTL 159
            .   .||.          ||.|| .|...|     :|:.|                .||..:.::
 Frog   355 G---GRPDVTYNLVCKRCGSDLT-RCRPCGSGVHYSPQQN----------------GLKTTKVSI 399

  Fly   160 TMEDLVPGDCGNYTCKVCNSLGCIR----HDTQVIVSDRVNHKPILMTGPLNLTLVVNSTGSMHC 220
            |  ||....  |||.:|....|..:    .|..|.|:...|     ...|..:|.:.....:.|.
 Frog   400 T--DLQAHT--NYTFEVWAINGVSKQNPGQDQAVSVTVTTN-----QAAPSTVTQIQPKEITRHS 455

  Fly   221 KYLSDLTSKKAWIFVPCHGMTNCSNNRSIIAE------DKDQLDFVNVRMEQEGWYTCVESNS-- 277
            ..|:....::|               ..:|.|      :|||         .|..|..|::.|  
 Frog   456 VSLTWPEPERA---------------NGVILEYEVKYYEKDQ---------NERSYRIVKTASRS 496

  Fly   278 ---LGQSNSTAYLRVVRSLHVLEAGVASGSLH---------------STSFVYIFVFGGLIFIFM 324
               .|.:..|||:..||:......|..||...               |.:.:.:.|.|.::.:.:
 Frog   497 ADIKGLNPLTAYVFHVRARTAAGYGEFSGPFEFTTNTVPSPMIGEGASPTVLLVSVAGSIVLVVI 561

  Fly   325 TTLFVFYAIRKMKHEKVLKQRIETVH--QWTKKVIIFKPEGGGDSSGSMDTMIMPVVRIQKQRTT 387
            .......:.|:.|:.|..::..|..|  |..|..:                              
 Frog   562 LIAAFVISRRRSKYSKAKQEADEEKHLNQGVKTYV------------------------------ 596

  Fly   388 VLQNGNEPAPFNEYEFP----LDSNWELPRSHLVLGATLGEGAFGRVVMAEV-----NNAIVAVK 443
                    .||. ||.|    .:...|:..|.:.:...:|.|.||.|....:     ....||:|
 Frog   597 --------DPFT-YEDPNQAVREFAKEIDASCIKIEKVIGVGEFGEVCSGRLKVPGKREIYVAIK 652

  Fly   444 MVKEGHTDDDIASLVREMEVMKIIGR--HINIINLLGCCSQNGPLYVIVEYAPHGNLKDFLYKNR 506
            .:|.|:||......:.|..:|   |:  |.|||:|.|..::..|:.:|.||..:|:|..||.||.
 Frog   653 TLKAGYTDKQRRDFLSEASIM---GQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLRKND 714

  Fly   507 PFGRDQDRDSSQPPPSPPAHVITEKDLIKFAHQIARGMDYLASRRCIHRDLAARNVLVSDDYVLK 571
              ||                 .|...|:.....|..||.||:....:||||||||:||:.:.|.|
 Frog   715 --GR-----------------FTVIQLVGMLRGIGSGMKYLSDMSYVHRDLAARNILVNSNLVCK 760

  Fly   572 IADFGLARDIQSTDYYRKNT-NGRLPIKWMAPESLQEKFYDSKSDVWSYGILLWEIMTYGQQPYP 635
            ::|||::|.::........| .|::||:|.|||::..:.:.|.||||||||::||:|:||::|| 
 Frog   761 VSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPY- 824

  Fly   636 TIMSAEELYTYLMSGQRMEKPAKCSMNIYILMRQCWHFNADDRPPFTEIVEYMDKLLQT----KE 696
            ..||.:::...:..|.|:..|..|.:.::.||..||.....|||.|.:||..:|||::.    |.
 Frog   825 WDMSNQDVIKAIEEGYRLPPPMDCPIALHQLMLDCWQKERSDRPKFGQIVSMLDKLIRNPNSLKR 889

  Fly   697 DYLD----VDIANLDTPPSTSD 714
            ..||    .:.|.||  ||:.:
 Frog   890 TGLDNSSRTNTALLD--PSSPE 909

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
htlNP_524394.2 Ig 101..191 CDD:472250 24/108 (22%)
Ig strand B 121..125 CDD:409353 2/3 (67%)
Ig strand C 134..138 CDD:409353 1/3 (33%)
Ig strand E 157..161 CDD:409353 0/3 (0%)
Ig strand F 171..176 CDD:409353 3/4 (75%)
Ig strand G 184..187 CDD:409353 0/6 (0%)
Ig 200..289 CDD:472250 18/99 (18%)
Ig strand B 216..220 CDD:409353 0/3 (0%)
Ig strand C 229..233 CDD:409353 1/3 (33%)
Ig strand E 255..259 CDD:409353 2/3 (67%)
Ig strand F 269..274 CDD:409353 1/4 (25%)
Ig strand G 282..285 CDD:409353 0/2 (0%)
Protein Kinases, catalytic domain 404..692 CDD:473864 101/299 (34%)
epha4XP_012825631.1 EphR_LBD_A4 30..203 CDD:198450
FN3 329..435 CDD:238020 28/129 (22%)
FN3 440..531 CDD:238020 23/114 (20%)
EphA2_TM 550..617 CDD:464211 15/105 (14%)
PTKc_EphR_A 615..881 CDD:270651 99/288 (34%)
SAM_EPH-A4 911..981 CDD:188944
Blue background indicates that the domain is not in the aligned region.

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