Protein Alignment Rim and Rims3

DIOPT Version :10

• Sequence 1: NP_001247163.1
• Gene: Rim / 42150
• FlyBaseID: FBgn0053547
• Length: 2798
• Species: Drosophila melanogaster
• Sequence 2: NP_075220.2
• Gene: Rims3 / 65025
• RGDID: 628762
• Length: 307
• Species: Rattus norvegicus
• Alignment Length: 333
• Identity: 128/333 - (38%)
• Similarity: 177/333 - (53%)
• Gaps: 49/333 - (14%)

  Fly  2476 GSKSAEGAGAEDKVDGSLS---DTANDRKKGGGVDQERSPKGGSGMGKK----------SNSTSQ 2527
            |......|||...|..|.|   :....::.|||.....:.|..|.:|.|          |.||.|
  Rat     4 GEPGPASAGASRNVVRSSSISGEICGSQQAGGGAGTTTAKKRRSSLGAKMVAIVGLTQWSKSTLQ 68

  Fly  2528 LSATGRKRRMGFGKKGKNSFTVHRSEEVLPGDITRELRTGGGLGVSLGGAGGAAGGSGGAGGGGL 2592
            |     .:..|..||.:::  :.||.|.   .|..|:|:    .|:..|:..:..||
  Rat    69 L-----PQPEGATKKLRSN--IRRSTET---GIAVEMRS----RVTRQGSRESTDGS-------- 111

  Fly  2593 SRGSSSEVDAIEQFFGDGAGGERFSPSLRNDGALNEFVDGLGPGQLVGRQVLGAPSLGDIQLSLC 2657
            :..:|||            |...|...|..:...::|:|||||.|:||||.|..|.:||:.:::.
  Rat   112 TNSNSSE------------GTFIFPTRLGAESQFSDFLDGLGPAQIVGRQTLATPPMGDVHIAIM 164

  Fly  2658 HQKGCLEVEVIRARGLQQKAQSKMLPAPYVKVYLVSGKRCVDKMKTSSARRTLDPLYQQQLVFKQ 2722
            .:.|.||||||.||||..|..||.|||.|:|.||:....||.|.||..|::|.||||||.|:|.:
  Rat   165 DRSGQLEVEVIEARGLTPKPGSKSLPATYIKAYLLENGACVAKKKTKVAKKTCDPLYQQALLFDE 229

  Fly  2723 SYTGCILQITVWGDYGRIEKKVFMGVAQIMLDDLNLSNIVIGWYKLFGTTSLVSCPTNIGLGSRR 2787
            ...|.:||:.|||||||::.|.|||:||||||:|:||.:|.||||||.|:|:..  :.:|..:||
  Rat   230 GPQGKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAVVTGWYKLFPTSSVAD--STLGSLTRR 292

  Fly  2788 SSIASLDS 2795
            .|.:||:|
  Rat   293 LSQSSLES 300

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rim	NP_001247163.1	PHD_SF	8..126	CDD:473978
		PDZ_RIM-like	813..920	CDD:467198
		C2A_RIM1alpha	1148..1272	CDD:175997
		C2B_RIM1alpha	2633..2775	CDD:175994	80/141 (57%)
Rims3	NP_075220.2	Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	86..120		12/60 (20%)
		C2	140..285	CDD:472691	80/146 (55%)