Protein Alignment Rim and rims3

DIOPT Version :9

• Sequence 1: NP_001247163.1
• Gene: Rim / 42150
• FlyBaseID: FBgn0053547
• Length: 2798
• Species: Drosophila melanogaster
• Sequence 2: XP_005170109.1
• Gene: rims3 / 563414
• ZFINID: ZDB-GENE-060503-788
• Length: 319
• Species: Danio rerio
• Alignment Length: 325
• Identity: 123/325 - (37%)
• Similarity: 181/325 - (55%)
• Gaps: 44/325 - (13%)

  Fly  2478 KSAEGAGAEDKVDGSLSDTANDRKKGGGVDQERSPKGGS-----GMGKKSNSTSQLSATGRKRRM 2537
            :|:..:||...::.|.|.|..|.....|..:.||..|..     |:.:.|.||.||:     ::.
Zfish    25 RSSSISGAMYSLEKSPSSTGPDGTSLTGNKKRRSSLGAKMVAIVGLSQWSKSTLQLN-----QQD 84

  Fly  2538 GFGKKGKNSFTVHRSEEVLPGDITRELRTGGGLGVSLGGAGGAAGGSGGAGGGGLSRGSSSEVDA 2602
            |..||.::  |:.||.|.   .|..|:|.    .|:..|:..:..||        :..:||:
Zfish    85 GGTKKLRS--TIRRSTET---GIAVEMRN----RVTRQGSKDSTDGS--------TNSNSSD--- 129

  Fly  2603 IEQFFGDGAGGERFSPSLR--NDGALNEFVDGLGPGQLVGRQVLGAPSLGDIQLSLCHQKGCLEV 2665
                      |....|:.|  .:...::|:|||||.|:||||.|..||:||:.:.:..:.|.|||
Zfish   130 ----------GTFIFPTTRLGPESQFSDFLDGLGPAQIVGRQTLATPSMGDVYIGVVDRGGQLEV 184

  Fly  2666 EVIRARGLQQKAQSKMLPAPYVKVYLVSGKRCVDKMKTSSARRTLDPLYQQQLVFKQSYTGCILQ 2730
            |:.:||.|..|..||.:||.|:|||::....|:.|.||...::||||.:||.|:|.:|..|.:||
Zfish   185 EITQARSLTPKPGSKNIPATYIKVYVLENGMCLAKKKTKVVKKTLDPTFQQSLMFDESPQGKVLQ 249

  Fly  2731 ITVWGDYGRIEKKVFMGVAQIMLDDLNLSNIVIGWYKLFGTTSLVSCPTNIGLGSRRSSIASLDS 2795
            :.|||||||::.|.|||:|||:||||:||::|.||||||.|:||..  .:||..:||.|.:||:|
Zfish   250 VIVWGDYGRMDSKCFMGMAQILLDDLDLSSMVGGWYKLFPTSSLAD--PSIGPLTRRLSQSSLES 312

  Fly  2796  2795
            Zfish   313  312

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rim	NP_001247163.1	PHD_SF	8..126	CDD:304600
		PDZ_signaling	817..919	CDD:238492
		C2A_RIM1alpha	1148..1272	CDD:175997
		C2B_RIM1alpha	2633..2775	CDD:175994	75/141 (53%)
rims3	XP_005170109.1	C2	152..296	CDD:301316	76/145 (52%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C170576379
Domainoid	1	1.000	148	1.000	Domainoid score	I4404
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D109268at2759
OrthoFinder	1	1.000	-	-		FOG0000817
OrthoInspector	1	1.000	-	-		otm24270
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR12157
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	8	7.950