DRSC/TRiP Functional Genomics Resources

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Protein Alignment Odj and CTCF

DIOPT Version :10

Sequence 1:NP_650661.1 Gene:Odj / 42145 FlyBaseID:FBgn0038551 Length:430 Species:Drosophila melanogaster
Sequence 2:NP_648109.1 Gene:CTCF / 38817 FlyBaseID:FBgn0035769 Length:818 Species:Drosophila melanogaster


Alignment Length:511 Identity:104/511 - (20%)
Similarity:171/511 - (33%) Gaps:189/511 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 ASKGSPEVSPVLSDPL---LKR----------------EVLDDTVD-----------TEDDKELL 120
            |.:|.|..:||:..|.   |:|                |:.|.|||           |.::.|:.
  Fly   184 APRGRPRKNPVIPKPEPMDLERELEELVDEPDISSMVTELSDYTVDEAAVEAATATLTPNEAEVY 248

  Fly   121 D-------DDKDLMDDDKDFLEDEK-----------------------PILRYPPAKKIRIE--- 152
            :       :|::....|.||:...|                       |...|..:||..|.   
  Fly   249 EFEDNATTEDENADKKDVDFVLSNKEVKLKTASSTSQNSNASGHKYSCPHCPYTASKKFLITRHS 313

  Fly   153 --------------DQNF------PNRQSPRVRVKRLRVPVVEKADSPPPPPREHVR-KPRKRRP 196
                          :::|      .|..:..:..|..:..:.|.|.:.......|.| |..|.:|
  Fly   314 RSHDVEPSFKCSICERSFRSNVGLQNHINTHMGNKPHKCKLCESAFTTSGELVRHTRYKHTKEKP 378

  Fly   197 K------------PKVDRSI------KRYVCDQCGWSFNDHSNMKDHKLRHF-EEKFSCDECGRK 242
            .            .|:.|.:      :.|.|..|.::..|...:|.|.:.|. |:|:.||.|..:
  Fly   379 HKCTECTYASVELTKLRRHMTCHTGERPYQCPHCTYASQDMFKLKRHMVIHTGEKKYQCDICKSR 443

  Fly   243 FYTMPLLRLHIRVHHKGEKP-YVCKFCGMGFANSPSRCR-------HERQMHANELVHPCKICGK 299
            |.....|:.|..:|...:|| :.|.:|       |:.|.       |.:.||.:::...|:.||:
  Fly   444 FTQSNSLKAHKLIHSVVDKPVFQCNYC-------PTTCGRKADLRVHIKHMHTSDVPMTCRRCGQ 501

  Fly   300 RFNSE---KGRLKHEEGHKS------------------------DQPDVHICLTCNKEFKEAQFL 337
            :....   |..:|..||.|.                        |:...| |..|.:.|::.|.|
  Fly   502 QLPDRYQYKLHVKSHEGEKCYSCKLCSYASVTQRHLASHMLIHLDEKPFH-CDQCPQAFRQRQLL 565

  Fly   338 HRHYSTKYHRKRVNLLVNGPKEEFQSEVD----------PAEFP------GYME--EGQAEMEDN 384
            .||         :||:.|   ||:|....          |.||.      .:||  :..|...:.
  Fly   566 RRH---------MNLVHN---EEYQPPEPREKLHKCPSCPREFTHKGNLMRHMETHDDSANAREK 618

  Fly   385 QAEL----------DVMLDNIDEEQYEDHEVLQ---DEDANFEDFEYEEAIPDGEE 427
            :..|          |..:..:.::||.|.:..|   :||.|.|.::..|..|:..|
  Fly   619 RRRLKLGRNVRLQKDGTVITLIKDQYVDMDRDQEENEEDDNPESYDLAEIEPENSE 674

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OdjNP_650661.1 zf-AD 5..78 CDD:462262
C2H2 Zn finger 209..229 CDD:275368 5/19 (26%)
SUF4-like 212..>257 CDD:411020 13/45 (29%)
C2H2 Zn finger 212..229 CDD:411020 4/16 (25%)
C2H2 Zn finger 236..256 CDD:411020 6/19 (32%)
C2H2 Zn finger 236..256 CDD:275368 6/19 (32%)
zf-H2C2_2 249..274 CDD:463886 7/25 (28%)
C2H2 Zn finger 265..283 CDD:275368 5/24 (21%)
C2H2 Zn finger 298..314 CDD:275368 4/18 (22%)
zf-C2H2_jaz 322..347 CDD:432381 8/24 (33%)
C2H2 Zn finger 324..343 CDD:275368 7/18 (39%)
CTCFNP_648109.1 FAP 116..>202 CDD:429334 6/17 (35%)
C2H2 Zn finger 296..316 CDD:275368 5/19 (26%)
COG5048 321..>621 CDD:227381 66/319 (21%)
C2H2 Zn finger 324..344 CDD:275368 2/19 (11%)
C2H2 Zn finger 352..373 CDD:275368 4/20 (20%)
C2H2 Zn finger 381..401 CDD:275368 2/19 (11%)
zf-H2C2_2 394..415 CDD:463886 4/20 (20%)
C2H2 Zn finger 409..429 CDD:275368 5/19 (26%)
zf-H2C2_2 422..446 CDD:463886 9/23 (39%)
C2H2 Zn finger 437..457 CDD:275368 6/19 (32%)
C2H2 Zn finger 467..485 CDD:275368 5/24 (21%)
C2H2 Zn finger 496..516 CDD:275370 5/19 (26%)
C2H2 Zn finger 524..544 CDD:275368 0/19 (0%)
zf-H2C2_2 536..561 CDD:463886 5/25 (20%)
C2H2 Zn finger 552..573 CDD:275368 9/29 (31%)
zf-C2H2 587..609 CDD:395048 5/21 (24%)
C2H2 Zn finger 589..609 CDD:275368 5/19 (26%)
Blue background indicates that the domain is not in the aligned region.

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