DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nnk and cg

DIOPT Version :10

Sequence 1:NP_650659.2 Gene:Nnk / 42143 FlyBaseID:FBgn0038549 Length:439 Species:Drosophila melanogaster
Sequence 2:NP_001097306.2 Gene:cg / 36571 FlyBaseID:FBgn0000289 Length:837 Species:Drosophila melanogaster


Alignment Length:257 Identity:70/257 - (27%)
Similarity:102/257 - (39%) Gaps:50/257 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   198 QNEEDEEESQEDDDELWQNEDGDSDTDADSMSDIEATSRQSALDEDKKPRRKYTKRSSPKNDDTD 262
            |..||.|:||.:...| :.|.|  ..:....::::.:...|..|...|..|.|:.....|:    
  Fly   243 QGLEDNEDSQGEAPNL-KLEPG--TLELSPKTELQESMHFSETDATIKKERPYSCDECGKS---- 300

  Fly   263 FL--KPAKKKRKTYISQKVHICDHCGKKFTDKGNFNLHVLRHSGVKPFECPECGQKEFN-RYILN 324
            ||  .......:.:..::.|||.||||.|..|...|.|:|.||..:|::|.|| :|.|. ::.|.
  Fly   301 FLLKHHLTTHARVHTGERPHICTHCGKSFAHKHCLNTHLLLHSTERPYQCQEC-KKSFTLKHHLL 364

  Fly   325 IHIRVK---------------------------HRGEKPYACQFCDERFV---HSTMRSRHENRV 359
            .|.||.                           |.||:||.|:.|.|.|.   |..|.||....:
  Fly   365 THSRVHSRERPFVCQECGRAFPLKRHLVTHSKFHAGERPYVCEECGESFAQENHLIMHSRFHGSL 429

  Fly   360 HRNKKTPKNFKCNYCDKRYESNYQRAKHEVVHTGERNFHCEVCKVSFTRNSNLKTHYRSRQH 421
            :       .|.|..|...:...:|...|..:| |:....|.||...|.:...|.:|.| |.|
  Fly   430 N-------PFVCAECGASFPRKFQLVNHGRIH-GKIPHSCTVCGKEFLQKRTLVSHMR-RVH 482

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NnkNP_650659.2 zf-AD 4..74 CDD:214871
C2H2 Zn finger 282..302 CDD:275368 10/19 (53%)
C2H2 Zn finger 310..331 CDD:275368 9/48 (19%)
C2H2 Zn finger 339..360 CDD:275368 8/23 (35%)
C2H2 Zn finger 371..388 CDD:275370 3/16 (19%)
zf-met 397..421 CDD:463736 8/23 (35%)
C2H2 Zn finger 399..417 CDD:275368 6/17 (35%)
cgNP_001097306.2 COG5048 287..>371 CDD:227381 30/88 (34%)
C2H2 Zn finger 294..314 CDD:275368 3/23 (13%)
zf-H2C2_2 306..331 CDD:463886 8/24 (33%)
C2H2 Zn finger 322..342 CDD:275368 10/19 (53%)
C2H2 Zn finger 350..370 CDD:275368 8/20 (40%)
C2H2 Zn finger 378..398 CDD:275368 0/19 (0%)
C2H2 Zn finger 406..426 CDD:275368 8/19 (42%)
C2H2 Zn finger 434..454 CDD:275368 4/19 (21%)
C2H2 Zn finger 461..482 CDD:275368 8/21 (38%)
C2H2 Zn finger 490..509 CDD:275368
C2H2 Zn finger 575..595 CDD:275368
C2H2 Zn finger 720..740 CDD:275368
C2H2 Zn finger 752..771 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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