DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nnk and lsy-27

DIOPT Version :10

Sequence 1:NP_650659.2 Gene:Nnk / 42143 FlyBaseID:FBgn0038549 Length:439 Species:Drosophila melanogaster
Sequence 2:NP_001256739.1 Gene:lsy-27 / 180149 WormBaseID:WBGene00009834 Length:250 Species:Caenorhabditis elegans


Alignment Length:94 Identity:23/94 - (24%)
Similarity:36/94 - (38%) Gaps:16/94 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   332 RGEKPYACQFCDERFVHSTMRSRHENRVHRNKKTPKNFKCNYCDKRYES-----NYQRAKHEVVH 391
            ||:  :.|..|.:.|.||...:||...:|.|:.|     |..|::....     .:.|.:|.:..
 Worm    22 RGK--FVCSSCSQNFQHSASLNRHRQLMHSNEHT-----CMMCERALNQKETIREHMRNEHNLAQ 79

  Fly   392 TGERNFHCEVCKVSFTRNSNLKTHYRSRQ 420
            .    |.|..|..:|.....|..|.:..|
 Worm    80 V----FTCGCCNWTFASKRQLTEHTKCIQ 104

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NnkNP_650659.2 zf-AD 4..74 CDD:214871
C2H2 Zn finger 282..302 CDD:275368
C2H2 Zn finger 310..331 CDD:275368
C2H2 Zn finger 339..360 CDD:275368 7/20 (35%)
C2H2 Zn finger 371..388 CDD:275370 3/21 (14%)
zf-met 397..421 CDD:463736 7/24 (29%)
C2H2 Zn finger 399..417 CDD:275368 5/17 (29%)
lsy-27NP_001256739.1 COG5236 <22..>122 CDD:227561 23/94 (24%)
C2H2 Zn finger 27..48 CDD:275368 7/20 (35%)
C2H2 Zn finger 54..75 CDD:275368 3/20 (15%)
C2H2 Zn finger 83..102 CDD:275368 5/18 (28%)
Blue background indicates that the domain is not in the aligned region.

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