DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17806 and ranshi

DIOPT Version :9

Sequence 1:NP_650658.1 Gene:CG17806 / 42142 FlyBaseID:FBgn0038548 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster


Alignment Length:428 Identity:130/428 - (30%)
Similarity:189/428 - (44%) Gaps:119/428 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LCRTCGQ--EAEHAKSLFDKEARDVLSNILKLTGFWLRNQPGVPTRICLSCLLDLNDAIAFRERC 66
            :|||||:  .||.:.::|:|..:..|.:|..|||..|:|...:|.|:|.||...|..||:|||||
  Fly     5 VCRTCGKRTNAERSLNIFEKRNQTTLEHIKLLTGAVLKNCSTLPNRLCASCQTCLQQAISFRERC 69

  Fly    67 IRTNSSWFEKQGKQEDSDTETAREGGNNRLESRVDVMPISIAQPQRRRILPQRSKKVDGVPLKTV 131
            :                  |..||    .|.|:.|...:.|.|...:.:|.|...::|       
  Fly    70 L------------------EVQRE----LLHSQDDEDFLRICQESPKSVLEQEELELD------- 105

  Fly   132 ETPIYPLVVPEIP-PADLVDPLRCEDPIQVKSEPQLSSDYPVE------SMNHEEP-------AS 182
                    :.||. ..:.:|.|. |.|||       ||.:.||      .:|.:||       .|
  Fly   106 --------LAEISIEVERLDDLN-EGPIQ-------SSGFKVEDILNESKINEDEPNNEDDIDYS 154

  Fly   183 EMPQVMKEEPRTLQVIGEV---------QKNRRKPRSKGCLEECPGKDMAKIENIDSTTNKTKEE 238
            ||..::.|....:....|:         ::|||.||                   ||        
  Fly   155 EMDYLIYESDTEVDAKQELKSDSENPKKRRNRRNPR-------------------DS-------- 192

  Fly   239 KYATRNKWGAAKRAYALEHRLYFCDQCGKTFSEKGNFNVHLRRHKGTKEFQCQECDRMEFTQHLL 303
                              :|.:||::||....::.:|.:|.:||:|.|||.|:.|:....|...|
  Fly   193 ------------------NRTFFCEECGNHIKDRISFILHCKRHRGVKEFGCEFCEDRFCTPAEL 239

  Fly   304 NLHVRIKHRGELPYVCKYCGKRFDNCLKRLNHERNHKESPVHRPHVCSTCQKAFKTSTALKDHIV 368
            ..|:| ||.||.|:.|::|.:.|.:...||.|||.|..   .||.||..|..||.||..||:|::
  Fly   240 KRHIR-KHTGEKPFKCRHCSRSFSDYSTRLKHERTHTN---ERPFVCKECNNAFTTSYILKNHML 300

  Fly   369 VHTGEQPFHCELCQTFFNRRNALATHYKSKHHRLKVEE 406
            |||||:.|.|:||...|:|...|.|||:|..||..:::
  Fly   301 VHTGEKAFRCDLCDKLFSRYTHLTTHYRSNAHRRNMQK 338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17806NP_650658.1 zf-AD 4..76 CDD:285071 29/73 (40%)
zf-C2H2 260..282 CDD:278523 6/21 (29%)
C2H2 Zn finger 262..282 CDD:275368 5/19 (26%)
C2H2 Zn finger 290..311 CDD:275368 6/20 (30%)
COG5048 <298..>383 CDD:227381 39/84 (46%)
C2H2 Zn finger 319..339 CDD:275368 8/19 (42%)
C2H2 Zn finger 350..370 CDD:275368 9/19 (47%)
ZnF_U1 375..407 CDD:197732 13/32 (41%)
C2H2 Zn finger 378..396 CDD:275368 8/17 (47%)
ranshiNP_649824.1 zf-AD 5..77 CDD:214871 32/93 (34%)
C2H2 Zn finger 198..218 CDD:275368 5/19 (26%)
COG5048 222..>276 CDD:227381 23/54 (43%)
C2H2 Zn finger 226..246 CDD:275368 6/20 (30%)
zf-H2C2_2 238..262 CDD:290200 10/24 (42%)
C2H2 Zn finger 254..274 CDD:275368 8/19 (42%)
zf-H2C2_2 269..291 CDD:290200 11/24 (46%)
C2H2 Zn finger 282..302 CDD:275368 9/19 (47%)
zf-H2C2_2 295..319 CDD:290200 13/23 (57%)
C2H2 Zn finger 310..328 CDD:275368 8/17 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 48 1.000 Domainoid score I19075
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 62 1.000 Inparanoid score I2531
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000724
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_120097
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.860

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