DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17806 and pita

DIOPT Version :9

Sequence 1:NP_650658.1 Gene:CG17806 / 42142 FlyBaseID:FBgn0038548 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_611806.3 Gene:pita / 37730 FlyBaseID:FBgn0034878 Length:683 Species:Drosophila melanogaster


Alignment Length:482 Identity:106/482 - (21%)
Similarity:176/482 - (36%) Gaps:115/482 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LCRTCGQEAEHAKSLFDKEAR-----DVLSNILKLTGFWLRNQPGVPTRICLSCLLDLNDAIAFR 63
            :||.|..|.:.| |:|::..|     ::...|:.:|...:....|:|..|||.|.|.......|:
  Fly    17 VCRFCLTEQKLA-SIFEENPRVKTTANLPLQIMAITAIEVYAGDGMPGHICLECRLLFEHCYRFK 80

  Fly    64 ERCIRTNS---------SWFEKQGKQEDSDTETAREGGNNRLESRVDVMPISIAQPQR--RRILP 117
            :.|.|..:         :|        .|..|..|.........::.|:|...|:|..  :::|.
  Fly    81 QMCKRAETLLRQYPLTGNW--------PSPLEKPRAPMTMVASKKLLVVPAKTAEPSETPKKLLN 137

  Fly   118 QRSKKVDGVPLKTVETPIYPLVVPEIPPADLVDPLRCED-PIQVKSEPQLSSDYPVESMNHEEPA 181
            ..:|....|.::.|:.....:|.|.........|.|... .::|.:..:||.| .|:|| .|:.|
  Fly   138 TMAKSSSQVIIEDVQVLESAMVTPRTVAGSSPVPRRSHAYELKVDNNQELSMD-DVQSM-LEDMA 200

  Fly   182 SEMPQVMKEEPR-------------TLQVIGE-----VQKNRRKPRSK-------GCLEECPGKD 221
            ||:.:...:.|:             :::::.:     |:.....|:.|       ..:.|....|
  Fly   201 SELEKEFPDIPQKASPVKPKVLNKSSIRILNKGPAAPVEPRLATPKVKRDDSGNVAIVTEVLDSD 265

  Fly   222 MAKIENIDSTTNKTKEEKYATRNKWGAAKRAYALEHRLYFCDQCGKTFSEKGNFNVHLRRHKGTK 286
            :...:..|.|.|   .||.||               .::.|..|.::|..:....:|...|..::
  Fly   266 LPLDDQDDPTKN---AEKVAT---------------DVFPCPDCERSFPLQQLLEIHRLNHTRSR 312

  Fly   287 EFQCQECDRMEFTQHLLNLHVRIKHRGELPYVCKYCGKRFDNCLKRLNHERNHKESP-------- 343
            .|||..|::..|:::.|..| ...|.||.|:.|..|.|.|........|||.|.:.|        
  Fly   313 SFQCLLCEKSFFSKYDLAKH-NFVHTGERPFKCAICSKAFTRKALLHRHERTHTDVPKFICVYCE 376

  Fly   344 -----------------VHRPHVCSTCQKAFKTSTALKDHIVVHTGEQPFHCELCQTFFNRRNAL 391
                             ..||..|..|.|:|.....|:.|..||:...||.|:.|:..|:..:.|
  Fly   377 KPFLSRQEMEKHAERHQKKRPFQCGVCTKSFAFKQGLERHETVHSTNLPFPCQHCERSFSTASKL 441

  Fly   392 ATH------------------YKSKHH 400
            |.|                  |...||
  Fly   442 ARHLVAHAGKRAYPCKYCHKSYMLSHH 468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17806NP_650658.1 zf-AD 4..76 CDD:285071 21/85 (25%)
zf-C2H2 260..282 CDD:278523 4/21 (19%)
C2H2 Zn finger 262..282 CDD:275368 4/19 (21%)
C2H2 Zn finger 290..311 CDD:275368 5/20 (25%)
COG5048 <298..>383 CDD:227381 30/109 (28%)
C2H2 Zn finger 319..339 CDD:275368 7/19 (37%)
C2H2 Zn finger 350..370 CDD:275368 6/19 (32%)
ZnF_U1 375..407 CDD:197732 11/44 (25%)
C2H2 Zn finger 378..396 CDD:275368 6/35 (17%)
pitaNP_611806.3 zf-AD 17..92 CDD:214871 20/75 (27%)
COG5048 <281..506 CDD:227381 48/204 (24%)
C2H2 Zn finger 288..308 CDD:275368 4/19 (21%)
C2H2 Zn finger 316..336 CDD:275368 5/20 (25%)
zf-H2C2_2 328..353 CDD:290200 10/25 (40%)
C2H2 Zn finger 344..364 CDD:275368 7/19 (37%)
C2H2 Zn finger 372..388 CDD:275370 0/15 (0%)
C2H2 Zn finger 400..420 CDD:275368 6/19 (32%)
C2H2 Zn finger 428..448 CDD:275368 6/19 (32%)
C2H2 Zn finger 456..476 CDD:275368 3/13 (23%)
C2H2 Zn finger 486..506 CDD:275368
HARE-HTH <566..625 CDD:294801
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 62 1.000 Inparanoid score I2531
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.050

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