DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17806 and si:ch211-276c2.4

DIOPT Version :10

Sequence 1:NP_650658.1 Gene:CG17806 / 42142 FlyBaseID:FBgn0038548 Length:421 Species:Drosophila melanogaster
Sequence 2:XP_002664740.1 Gene:si:ch211-276c2.4 / 321704 ZFINID:ZDB-GENE-030131-423 Length:394 Species:Danio rerio


Alignment Length:239 Identity:69/239 - (28%)
Similarity:111/239 - (46%) Gaps:28/239 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   172 VESMNHEEPASEMPQ--VMKEEPRTLQVIGEVQKNRRKPRSKGCLEECPGKDMAKIENIDSTTNK 234
            :|....|...||:.|  |..||....|...|:.::...       ||...:|....::.|...::
Zfish     1 MEFFEVEIDLSELEQSTVSDEEDIEEQADQELNEDEDD-------EEDEDEDEDDDDDDDDDDDE 58

  Fly   235 TKEEKYATRNKWGAAKRAYALEHRLYFCDQCGKTFSEKGNFNVHLRRHKGTKEFQCQECDRMEFT 299
            .::|     :::..:|:.......|:.|.||||.:....:..:||..|.|.|.|.|.:|::...|
Zfish    59 DEDE-----DEYYKSKKTPKTSKTLHTCSQCGKNYKHISSLRIHLLSHTGEKPFHCDQCEKTYST 118

  Fly   300 QHLLNLHVRIKHRGELPYVCKYCGK---RFDNCLKRLNHERNHKESPVHRPHVCSTCQKAFKTST 361
            ...|.:| ::.|..|.||.|..||:   |.|:|.:   |::.|.:.   |.|||:.|.|:|.|.:
Zfish   119 LSGLKIH-QVVHFSERPYSCSVCGRSFSRLDSCKQ---HQKTHDKV---RDHVCTECGKSFTTFS 176

  Fly   362 ALKDHIVVHTGEQPFHCELCQTFF----NRRNALATHYKSKHHR 401
            .||.|.::|:|.:||.|..|...|    ||::....|...|.||
Zfish   177 QLKQHQIIHSGLKPFKCSYCDRSFTQAGNRKSHERIHTGEKPHR 220

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17806NP_650658.1 zf-AD 4..75 CDD:462262
zf-C2H2 260..282 CDD:395048 7/21 (33%)
C2H2 Zn finger 262..282 CDD:275368 7/19 (37%)
C2H2 Zn finger 290..311 CDD:275368 5/20 (25%)
C2H2 Zn finger 319..339 CDD:275368 7/22 (32%)
C2H2 Zn finger 350..370 CDD:275368 8/19 (42%)
ZnF_U1 375..407 CDD:197732 11/31 (35%)
C2H2 Zn finger 378..396 CDD:275368 6/21 (29%)
si:ch211-276c2.4XP_002664740.1 C2H2 Zn finger 81..101 CDD:275368 7/19 (37%)
COG5048 <90..369 CDD:227381 47/138 (34%)
C2H2 Zn finger 109..129 CDD:275368 5/20 (25%)
C2H2 Zn finger 137..157 CDD:275368 7/22 (32%)
C2H2 Zn finger 165..185 CDD:275368 8/19 (42%)
C2H2 Zn finger 193..213 CDD:275368 5/19 (26%)
C2H2 Zn finger 221..241 CDD:275368 69/239 (29%)
C2H2 Zn finger 249..269 CDD:275368
C2H2 Zn finger 277..297 CDD:275368
C2H2 Zn finger 305..325 CDD:275368
C2H2 Zn finger 333..353 CDD:275368
C2H2 Zn finger 361..381 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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