DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17806 and Gfi1b

DIOPT Version :10

Sequence 1:NP_650658.1 Gene:CG17806 / 42142 FlyBaseID:FBgn0038548 Length:421 Species:Drosophila melanogaster
Sequence 2:XP_006233851.1 Gene:Gfi1b / 311832 RGDID:1311727 Length:363 Species:Rattus norvegicus


Alignment Length:336 Identity:87/336 - (25%)
Similarity:128/336 - (38%) Gaps:76/336 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   108 AQPQRRRILPQRSKKVDGVPLKTVETPIYPLVVPEIPPADLVDPLRCEDPIQVKSEPQLSSDYPV 172
            |..|::.:|..:|     :| |....|..|.|..:  |.|...||....|..   :|..|.|...
  Rat    59 AVKQKQEMLLNQS-----LP-KMASAPEGPHVTSQ--PQDGESPLSESPPFY---KPSFSWDTLA 112

  Fly   173 ESMNH--EEPASEMPQVMKEEPRTLQVIGEVQKNRRKPRSKGCLEECPGKD---MAKIENIDSTT 232
            .|..|  ::..|.|.....|  |::::.|.......:......|...||.|   ..|...:.||.
  Rat   113 SSYRHSYQQTPSTMQSAFLE--RSVRLYGSPLVPSTESPLDFSLRYSPGMDTYHCVKCNKVFSTP 175

  Fly   233 NKTKEEKYATRNKWGAAKRAYALEHRLYFCDQCGKTFSEKGNFNVHLRRH--------------- 282
            :..  |.:..|:..|.         |.:.||.|||||....:...|...|               
  Rat   176 HGL--EVHVRRSHSGT---------RPFACDICGKTFGHAVSLEQHTHVHSQGVPARSSPSPSLA 229

  Fly   283 ------------------KGTKEFQCQECDRMEFTQHLLNLHVRIKHRGELPYVCKYCGKRFDNC 329
                              :..:.|:|:.|.:.......|:.|:.| |....||.|::|||||   
  Rat   230 VPGLEAPPAPDPPRPRFLRQERSFECRMCGKAFKRSSTLSTHLLI-HSDTRPYPCQFCGKRF--- 290

  Fly   330 LKRLNHERN--HKESPVH---RPHVCSTCQKAFKTSTALKDHIVVHTGEQPFHCELCQTFFNRRN 389
                 |:::  .|.:.:|   :||.|..|.|||..|:.|..|...|||.:||.||||...|.|:.
  Rat   291 -----HQKSDMKKHTYIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFSCELCTKGFQRKV 350

  Fly   390 ALATHYKSKHH 400
            .|..|.:|:|:
  Rat   351 DLRRHRESQHN 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17806NP_650658.1 zf-AD 4..75 CDD:462262
zf-C2H2 260..282 CDD:395048 8/21 (38%)
C2H2 Zn finger 262..282 CDD:275368 8/19 (42%)
C2H2 Zn finger 290..311 CDD:275368 5/20 (25%)
C2H2 Zn finger 319..339 CDD:275368 7/21 (33%)
C2H2 Zn finger 350..370 CDD:275368 8/19 (42%)
ZnF_U1 375..407 CDD:197732 12/26 (46%)
C2H2 Zn finger 378..396 CDD:275368 8/17 (47%)
Gfi1bXP_006233851.1 C2H2 Zn finger 165..186 CDD:275368 5/22 (23%)
C2H2 Zn finger 194..214 CDD:275368 8/19 (42%)
C2H2 Zn finger 255..275 CDD:275368 5/20 (25%)
COG5048 263..>340 CDD:227381 30/85 (35%)
C2H2 Zn finger 283..303 CDD:275368 8/27 (30%)
zf-H2C2_2 295..320 CDD:463886 9/24 (38%)
C2H2 Zn finger 311..331 CDD:275368 8/19 (42%)
C2H2 Zn finger 339..356 CDD:275368 7/16 (44%)
Blue background indicates that the domain is not in the aligned region.

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