DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17806 and LOC100488006

DIOPT Version :10

Sequence 1:NP_650658.1 Gene:CG17806 / 42142 FlyBaseID:FBgn0038548 Length:421 Species:Drosophila melanogaster
Sequence 2:XP_002937452.2 Gene:LOC100488006 / 100488006 XenbaseID:XB-GENE-29079027 Length:383 Species:Xenopus tropicalis


Alignment Length:208 Identity:72/208 - (34%)
Similarity:93/208 - (44%) Gaps:31/208 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   217 CP--GKDMAKIENIDSTTNK---TKEEKYATRNKWGAAK------------RAYALEHRLYFCDQ 264
            ||  ||.......:  ||:|   |.|..|..   |...|            |.:..| :.|.|.|
 Frog   180 CPDCGKRFTSSATL--TTHKRIHTGERPYIC---WECGKSFTSNSSLFLHNRTHTGE-KPYECKQ 238

  Fly   265 CGKTFSEKGNFNVHLRRHKGTKEFQCQECDRMEFTQHLLNLHVRIKHRGELPYVCKYCGKRFDNC 329
            ||||||.......|.|.|.|.|.:.|.||.:..|....|..| :..|.||..|:|..|||.| .|
 Frog   239 CGKTFSCSSALVTHTRTHTGEKPYTCAECGKSFFDNSRLLKH-QATHTGEWAYMCTICGKGF-TC 301

  Fly   330 LKRLN-HERNHKESPVHRPHVCSTCQKAFKTSTALKDHIVVHTGEQPFHCELCQTFFNRRNALAT 393
            :..|| |:|:|..   .||..|..|.|:|..::.|..|...||||:|:.|.:|...|.|:..:.|
 Frog   302 ISNLNVHQRSHTG---ERPFSCGQCGKSFTNNSYLVRHQTTHTGERPYPCPICGKTFTRKGHVVT 363

  Fly   394 HYKSKHHRLKVEE 406
            |  .|.|..|:|:
 Frog   364 H--QKIHTKKMEK 374

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17806NP_650658.1 zf-AD 4..75 CDD:462262
zf-C2H2 260..282 CDD:395048 11/21 (52%)
C2H2 Zn finger 262..282 CDD:275368 10/19 (53%)
C2H2 Zn finger 290..311 CDD:275368 6/20 (30%)
C2H2 Zn finger 319..339 CDD:275368 10/20 (50%)
C2H2 Zn finger 350..370 CDD:275368 6/19 (32%)
ZnF_U1 375..407 CDD:197732 11/32 (34%)
C2H2 Zn finger 378..396 CDD:275368 6/17 (35%)
LOC100488006XP_002937452.2 C2H2 Zn finger 124..144 CDD:275368
zf-H2C2_2 136..161 CDD:463886
C2H2 Zn finger 152..172 CDD:275368
COG5048 <177..327 CDD:227381 54/157 (34%)
C2H2 Zn finger 180..200 CDD:275368 7/21 (33%)
C2H2 Zn finger 208..228 CDD:275368 3/22 (14%)
C2H2 Zn finger 236..256 CDD:275368 10/19 (53%)
C2H2 Zn finger 264..284 CDD:275368 6/20 (30%)
C2H2 Zn finger 292..312 CDD:275368 10/20 (50%)
C2H2 Zn finger 320..340 CDD:275368 6/19 (32%)
zf-H2C2_2 332..357 CDD:463886 10/24 (42%)
C2H2 Zn finger 348..368 CDD:275368 7/21 (33%)
Blue background indicates that the domain is not in the aligned region.

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