DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17803 and zgc:193790

DIOPT Version :9

Sequence 1:NP_001303488.1 Gene:CG17803 / 42141 FlyBaseID:FBgn0038547 Length:587 Species:Drosophila melanogaster
Sequence 2:NP_001122163.1 Gene:zgc:193790 / 557346 ZFINID:ZDB-GENE-080723-55 Length:288 Species:Danio rerio


Alignment Length:245 Identity:70/245 - (28%)
Similarity:107/245 - (43%) Gaps:32/245 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   294 LSLPKKPQLRVSPEEK-----------NRRRRERIQAKPLNYVCDKCGHTFRQRSQLQMHLLRHN 347
            :.:.:||. .|..|:|           |.:...:::..   :.|..||..::.:|.|..|:..|.
Zfish     1 MEIKEKPS-SVKDEKKEEQTDAYGHTVNTQTEMKVKGA---FNCSDCGRNYKYKSDLNSHMRTHT 61

  Fly   348 RAKNFECPECPKKFYDLYTRNIHVRALHKGEHPFPCNHCNESFANASSRHRHERDVHGAGNRIRT 412
            ..:.|.|.:|.|.|......::|:| :|.||.||.|:.|.:::.|.:....|.| ||        
Zfish    62 GERLFTCTKCGKSFTTSGKLHVHMR-VHTGEKPFECSQCGQAYKNNADLITHRR-VH-------- 116

  Fly   413 RVKSKEEGSSRHYCTQCTKSYTSKKGLVLHMNFHNGSRPFQCKICQMKFADPSAMKRHQALHDKF 477
                  .|.....|..|.||:|||..|..|:..|...:||.|..|...|...:.:|||..:|...
Zfish   117 ------TGMKPFNCKHCRKSFTSKGALRHHLRSHTDKKPFSCSHCDKTFLTKALLKRHLVVHTAA 175

  Fly   478 -PIRCDICLKGFLLRSQLTKHQDVHTGMHPHRCEICDVHYRHRYNLNKHK 526
             |..|.:|...||...:|..|:.:|||..||:|..|...:|...||..|:
Zfish   176 KPHACSVCGNTFLYLQKLKVHELIHTGEKPHKCSDCGKSFRTSSNLKIHQ 225

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17803NP_001303488.1 zf-AD 86..160 CDD:214871
COG5048 <323..528 CDD:227381 64/205 (31%)
zf-C2H2 324..346 CDD:278523 6/21 (29%)
C2H2 Zn finger 326..346 CDD:275368 6/19 (32%)
C2H2 Zn finger 354..375 CDD:275368 6/20 (30%)
C2H2 Zn finger 383..401 CDD:275368 4/17 (24%)
C2H2 Zn finger 426..446 CDD:275368 9/19 (47%)
C2H2 Zn finger 454..474 CDD:275368 6/19 (32%)
C2H2 Zn finger 481..501 CDD:275368 6/19 (32%)
C2H2 Zn finger 509..528 CDD:275368 6/18 (33%)
zgc:193790NP_001122163.1 C2H2 Zn finger 40..60 CDD:275368 6/19 (32%)
COG5048 <45..242 CDD:227381 61/197 (31%)
zf-H2C2_2 52..77 CDD:290200 8/24 (33%)
C2H2 Zn finger 68..88 CDD:275368 6/20 (30%)
C2H2 Zn finger 96..116 CDD:275368 5/20 (25%)
C2H2 Zn finger 124..144 CDD:275368 9/19 (47%)
C2H2 Zn finger 152..172 CDD:275368 6/19 (32%)
C2H2 Zn finger 180..200 CDD:275368 6/19 (32%)
zf-H2C2_2 193..217 CDD:290200 9/23 (39%)
C2H2 Zn finger 208..228 CDD:275368 6/18 (33%)
zf-H2C2_2 220..243 CDD:290200 3/6 (50%)
C2H2 Zn finger 236..256 CDD:275368
C2H2 Zn finger 262..282 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.