DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17803 and pita

DIOPT Version :9

Sequence 1:NP_001303488.1 Gene:CG17803 / 42141 FlyBaseID:FBgn0038547 Length:587 Species:Drosophila melanogaster
Sequence 2:NP_611806.3 Gene:pita / 37730 FlyBaseID:FBgn0034878 Length:683 Species:Drosophila melanogaster


Alignment Length:509 Identity:116/509 - (22%)
Similarity:188/509 - (36%) Gaps:117/509 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 CRTCF---RIISRHEDAQDLYDRVNIALLHHIKVITGVWIQQGVKELPHHICSTCQETVNKSMEF 147
            ||.|.   ::.|..|:...:....|:.|  .|..||.:.:..| ..:|.|||..|:........|
  Fly    18 CRFCLTEQKLASIFEENPRVKTTANLPL--QIMAITAIEVYAG-DGMPGHICLECRLLFEHCYRF 79

  Fly   148 RAKCQQVD---------------------------------------------KKLRQTTEKYNI 167
            :..|::.:                                             |||..|..|.:.
  Fly    80 KQMCKRAETLLRQYPLTGNWPSPLEKPRAPMTMVASKKLLVVPAKTAEPSETPKKLLNTMAKSSS 144

  Fly   168 QICDEEMESELENVLYEESAQQAKGVVGLEDFSSELLPDSEGVLDEDDFPLDAEPTQFSLSEDEL 232
            |:..|::: .||:.:...........|.....:.||..|:...|..||..        |:.|   
  Fly   145 QVIIEDVQ-VLESAMVTPRTVAGSSPVPRRSHAYELKVDNNQELSMDDVQ--------SMLE--- 197

  Fly   233 DLDRDTEKDFA-LEQ----------NKSCNEIISIRKCKTKEEIGKVDHGAKVYKVVLGEYNSLK 286
            |:..:.||:|. :.|          |||...|::      |.....|:......||...:..::.
  Fly   198 DMASELEKEFPDIPQKASPVKPKVLNKSSIRILN------KGPAAPVEPRLATPKVKRDDSGNVA 256

  Fly   287 ETAPKYSLSLPKKPQLRVSPEEKNRRRRERIQAKPLNYVCDKCGHTFRQRSQLQMHLLRHNRAKN 351
            .........||      :..::...:..|::....  :.|..|..:|..:..|::|.|.|.|:::
  Fly   257 IVTEVLDSDLP------LDDQDDPTKNAEKVATDV--FPCPDCERSFPLQQLLEIHRLNHTRSRS 313

  Fly   352 FECPECPKKF---YDLYTRNIHVRALHKGEHPFPCNHCNESFANASSRHRHER---DVHGAGNRI 410
            |:|..|.|.|   |||...|.    :|.||.||.|..|:::|...:..|||||   ||       
  Fly   314 FQCLLCEKSFFSKYDLAKHNF----VHTGERPFKCAICSKAFTRKALLHRHERTHTDV------- 367

  Fly   411 RTRVKSKEEGSSRHYCTQCTKSYTSKKGLVLHMNFHNGSRPFQCKICQMKFADPSAMKRHQALHD 475
                       .:..|..|.|.:.|::.:..|...|...|||||.:|...||....::||:.:|.
  Fly   368 -----------PKFICVYCEKPFLSRQEMEKHAERHQKKRPFQCGVCTKSFAFKQGLERHETVHS 421

  Fly   476 -KFPIRCDICLKGFLLRSQLTKHQDVHTGMHPHRCEICDVHYRHRYNLNKHKNT 528
             ..|..|..|.:.|...|:|.:|...|.|...:.|:.|...|...::|::|..|
  Fly   422 TNLPFPCQHCERSFSTASKLARHLVAHAGKRAYPCKYCHKSYMLSHHLSRHLRT 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17803NP_001303488.1 zf-AD 86..160 CDD:214871 21/121 (17%)
COG5048 <323..528 CDD:227381 63/211 (30%)
zf-C2H2 324..346 CDD:278523 6/21 (29%)
C2H2 Zn finger 326..346 CDD:275368 6/19 (32%)
C2H2 Zn finger 354..375 CDD:275368 8/23 (35%)
C2H2 Zn finger 383..401 CDD:275368 6/17 (35%)
C2H2 Zn finger 426..446 CDD:275368 5/19 (26%)
C2H2 Zn finger 454..474 CDD:275368 6/19 (32%)
C2H2 Zn finger 481..501 CDD:275368 6/19 (32%)
C2H2 Zn finger 509..528 CDD:275368 5/18 (28%)
pitaNP_611806.3 zf-AD 17..92 CDD:214871 18/76 (24%)
COG5048 <281..506 CDD:227381 64/219 (29%)
C2H2 Zn finger 288..308 CDD:275368 6/19 (32%)
C2H2 Zn finger 316..336 CDD:275368 8/23 (35%)
zf-H2C2_2 328..353 CDD:290200 11/28 (39%)
C2H2 Zn finger 344..364 CDD:275368 8/19 (42%)
C2H2 Zn finger 372..388 CDD:275370 4/15 (27%)
C2H2 Zn finger 400..420 CDD:275368 6/19 (32%)
C2H2 Zn finger 428..448 CDD:275368 6/19 (32%)
C2H2 Zn finger 456..476 CDD:275368 6/20 (30%)
C2H2 Zn finger 486..506 CDD:275368
HARE-HTH <566..625 CDD:294801
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 62 1.000 Inparanoid score I2531
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.050

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