DRSC/TRiP Functional Genomics Resources

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Protein Alignment TyrRII and htr1b

DIOPT Version :10

Sequence 1:NP_650651.1 Gene:TyrRII / 42135 FlyBaseID:FBgn0038541 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_001122181.1 Gene:htr1b / 561647 ZFINID:ZDB-GENE-081022-141 Length:380 Species:Danio rerio


Alignment Length:535 Identity:141/535 - (26%)
Similarity:211/535 - (39%) Gaps:176/535 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 DVMATGAGAGKLGVPSMNSYLVSMAWPKSLAVAVFLVIILVTVVGNTLVILAVLTTRRLRTVTNC 111
            :|:.:..|......|..:....|.|:..:|: :|..:|.|.|::.|..||..:..:|:|:|..|.
Zfish    15 EVLNSSTGTNVTLTPKTDEKQESFAFQVTLS-SVLGLITLATILSNAFVIATISQSRKLQTPANF 78

  Fly   112 FVMNLAITDWLVGTCVMPPSVVLYITGTWRFGWILCDIWISLDILLCSGSILSLCAISLDRYLAV 176
            .:.:||:||.||...|||..|:..:|..|..|.::||||:|.||..|:.|||.||.|:||||.|:
Zfish    79 LIASLAVTDLLVSVLVMPICVLYTVTREWTLGQVICDIWLSSDITCCTASILHLCVIALDRYWAI 143

  Fly   177 TQPLTYSKKRRSKRLALLMILVVWITALSITCPPYLGWYEVGRHQAEFVDCRYNQNK-GYVVFSA 240
            |..:.|:|||...| |..|:...||.|:||:.||:. |.:|  ...|...|..|.:. .|.::|.
Zfish   144 TDAVEYAKKRTQAR-AAGMVATAWIIAISISLPPFF-WRQV--KAGELTTCSVNTDHIFYTIYST 204

  Fly   241 MGSFFIPLTVMLYVYVKIGYVLTSRRQRIVRDAYSERTADYDVDGDNFISESEHYHCTPTKWLPN 305
            .|:|:||..:::.:|   |.:....|:||::.                         :|.|  |.
Zfish   205 FGAFYIPTLLLIALY---GRIYVEARKRILKQ-------------------------SPKK--PG 239

  Fly   306 RKSRWRFNSLHDPPPSAATNA-AAKGHQSSVKCSKCSKCSSATGTAGAGAGAGVVDKTLTFKHQP 369
            :    |..|.|     .:||: |:....|.:.|.:...||. :|:.|                  
Zfish   240 K----RLTSAH-----LSTNSPASVASTSPLHCGRQDLCSD-SGSLG------------------ 276

  Fly   370 TFYELVEVSRLSSLIHCSAISCKYGGPCMHSTPSGMHYVGTEASFSDTCLGGNVSNNTTTTTTNT 434
                                                                  |:|....|.:.
Zfish   277 ------------------------------------------------------SDNQIRVTVSD 287

  Fly   435 VALETNEKLEAEAKQKQQQQRSSFDHHHPHAHHHGSHGQQSHHNHHHRMPMRVSTTKRDSKTAKT 499
            ..||..                                             |:|.. |:.|..||
Zfish   288 SLLEKK---------------------------------------------RISAA-RERKATKT 306

  Fly   500 LTIVMGGLIACWLPFFVYYLLIP-----FLPRPAVLEDLMFGFTWIGWVNCAINPFIYAFYNPDF 559
            |.|::|..|.||||||:|.||||     |.|      :|...|||:|:||..|||.||...|.||
Zfish   307 LGIILGAYIVCWLPFFIYTLLIPLCSSCFSP------ELFDFFTWLGYVNSLINPIIYTMSNDDF 365

  Fly   560 RTAFWRLTCRPICKQ 574
            :.||.::.....|::
Zfish   366 KKAFHKVISFRCCRR 380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TyrRIINP_650651.1 7tm_GPCRs 78..>270 CDD:475119 73/192 (38%)
TM helix 1 78..101 CDD:410628 7/22 (32%)
TM helix 2 110..132 CDD:410628 10/21 (48%)
TM helix 3 148..170 CDD:410628 13/21 (62%)
TM helix 4 194..210 CDD:410628 6/15 (40%)
TM helix 5 233..256 CDD:410628 6/23 (26%)
7tm_GPCRs <491..563 CDD:475119 36/76 (47%)
TM helix 6 497..519 CDD:320098 13/21 (62%)
TM helix 7 531..556 CDD:320098 12/24 (50%)
htr1bNP_001122181.1 7tm_GPCRs 39..369 CDD:475119 134/498 (27%)
TM helix 1 44..68 CDD:320455 8/24 (33%)
TM helix 2 77..99 CDD:320455 10/21 (48%)
TM helix 3 115..137 CDD:320455 13/21 (62%)
TM helix 4 160..176 CDD:320455 6/15 (40%)
TM helix 5 197..220 CDD:320455 7/25 (28%)
TM helix 6 304..326 CDD:320455 13/21 (62%)
TM helix 7 337..362 CDD:320455 13/30 (43%)

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