DRSC/TRiP Functional Genomics Resources

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Protein Alignment TyrRII and htr1d

DIOPT Version :10

Sequence 1:NP_650651.1 Gene:TyrRII / 42135 FlyBaseID:FBgn0038541 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_001139158.1 Gene:htr1d / 556429 ZFINID:ZDB-GENE-090409-3 Length:386 Species:Danio rerio


Alignment Length:552 Identity:148/552 - (26%)
Similarity:221/552 - (40%) Gaps:191/552 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 NSSDGTLLLIQTSAAPGGDVMATGAGAGKLGVPSMNSY----LVSMAWPKSLAVAVFLVII-LVT 88
            |||| ...||..:.:|                .::.|:    |:|:    .::::..|.|: |.|
Zfish     5 NSSD-EFFLINATVSP----------------TTLESWDDATLLSL----QISISAMLAIVTLAT 48

  Fly    89 VVGNTLVILAVLTTRRLRTVTNCFVMNLAITDWLVGTCVMPPSVVLYITGTWRFGWILCDIWISL 153
            .:.|..||..:..||:|.|..|..:.:||.||.||...|||.|:|..::.||..|.|:||||:|.
Zfish    49 ALSNAFVIATIFLTRKLHTPANFLIGSLAATDLLVSILVMPISIVYTVSKTWTLGQIVCDIWLSS 113

  Fly   154 DILLCSGSILSLCAISLDRYLAVTQPLTYSKKRRSKRLALLMILVVWITALSITCPPYLGWYEVG 218
            ||..|:.|||.||.|:||||.|:|..|.|| |||:.|.|.|||::||:.::||:.|| |.|.:..
Zfish   114 DITFCTASILHLCVIALDRYWAITDALEYS-KRRTMRRAALMIVIVWVISVSISLPP-LFWRQAK 176

  Fly   219 RHQAEFVDCRYNQNK-GYVVFSAMGSFFIPLTVMLYVYVKIGYVLTSRRQRIVRDAYSERTADYD 282
            .|: |..:|..|.:: .|.::|..|:|::|..:::.:|   |.:..:.|.||.:           
Zfish   177 AHE-ELTECMVNTDQISYTLYSTFGAFYVPTVLLMILY---GRIYVAARSRIFK----------- 226

  Fly   283 VDGDNFISESEHYHCTPTKWLPNRKSRWRFNSLHDPPPSAATNAAAKGHQSSVKCSKCS--KCSS 345
                                              .|..|.....||:..|:|...|.||  ..|:
Zfish   227 ----------------------------------TPATSGKRFTAAQLIQNSAGSSLCSLNSTSN 257

  Fly   346 ATGTAGAGAGAGVVDKTLTFKHQPTFYELVEVSRLSSLIHCSAISCKYGGPCMHSTPSGMHYVGT 410
            ..|...||.|.|                                             ||      
Zfish   258 QEGHLNAGGGGG---------------------------------------------SG------ 271

  Fly   411 EASFSDTCLGGNVSNNTTTTTTNTVALETNEKLEAEAKQKQQQQRSSFDHHHPHAHHHGSHGQQS 475
                     ||......:...||:|.:    ||.....::::                       
Zfish   272 ---------GGGGGGGGSPLFTNSVKV----KLADSVLERKR----------------------- 300

  Fly   476 HHNHHHRMPMRVSTTKRDSKTAKTLTIVMGGLIACWLPFFVYYLLIPFLPRPAVLEDLMFG---- 536
                        ....|:.|..|||.|::|..|.|||||||:.|::      .|.:|..:.    
Zfish   301 ------------LCAAREKKATKTLGIILGAFIVCWLPFFVFTLVM------GVCKDCWYHPVLF 347

  Fly   537 --FTWIGWVNCAINPFIYAFYNPDFRTAFWRL 566
              |||:|::|..|||.||..:|.||:.||.:|
Zfish   348 DVFTWLGYLNSLINPVIYTAFNDDFKQAFHKL 379

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TyrRIINP_650651.1 7tm_GPCRs 78..>270 CDD:475119 79/193 (41%)
TM helix 1 78..101 CDD:410628 7/23 (30%)
TM helix 2 110..132 CDD:410628 10/21 (48%)
TM helix 3 148..170 CDD:410628 13/21 (62%)
TM helix 4 194..210 CDD:410628 7/15 (47%)
TM helix 5 233..256 CDD:410628 5/23 (22%)
7tm_GPCRs <491..563 CDD:475119 31/77 (40%)
TM helix 6 497..519 CDD:320098 13/21 (62%)
TM helix 7 531..556 CDD:320098 11/30 (37%)
htr1dNP_001139158.1 7tmA_5-HT1B_1D 31..376 CDD:320455 136/504 (27%)
TM helix 1 36..62 CDD:320455 7/25 (28%)
TM helix 2 69..95 CDD:320455 12/25 (48%)
TM helix 3 107..137 CDD:320455 19/29 (66%)
TM helix 4 149..172 CDD:320455 12/23 (52%)
TM helix 5 190..219 CDD:320455 7/31 (23%)
TM helix 6 304..334 CDD:320455 16/29 (55%)
TM helix 7 344..369 CDD:320455 10/24 (42%)

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