DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TyrRII and ser-4

DIOPT Version :10

Sequence 1:NP_650651.1 Gene:TyrRII / 42135 FlyBaseID:FBgn0038541 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_497452.1 Gene:ser-4 / 175322 WormBaseID:WBGene00004779 Length:445 Species:Caenorhabditis elegans


Alignment Length:507 Identity:143/507 - (28%)
Similarity:217/507 - (42%) Gaps:134/507 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 LAVAVFLVIILVTVVGNTLVILAVLTTRRLRTVTNCF-VMNLAITDWLVGTCVMPPSVVLYITGT 139
            :..:|.||:||...:||..||||::..|.||.....: :.:||:.|.|||..|.|......:|||
 Worm    53 ILASVLLVLILSCFIGNLFVILAIIMERDLRGRPQYYLIFSLAVADLLVGMIVTPLGAWFTVTGT 117

  Fly   140 WRFGWILCDIWISLDILLCSGSILSLCAISLDRYLAVTQPLTYSKKRRSKRLALLMILVVWITAL 204
            |..|.::||.|||:|:|:|:.|||.|.||:||||.::|. :.|.:.|..||:. ||:.|:|.|:|
 Worm   118 WNLGVVVCDFWISVDVLVCTASILHLVAIALDRYWSITD-ICYVQNRTPKRIT-LMLAVIWFTSL 180

  Fly   205 SITCPPYLGWYEVGRHQAEFVD-------CRYNQNKGYVVFSAMGSFFIPLTVMLYVYVKIGYVL 262
            .|:..|:.||.:.|     |.|       |..:|...|.|||...:|:|||..::.||.||   :
 Worm   181 LISLAPFAGWKDEG-----FSDRVLKSHVCLISQQISYQVFSTATAFYIPLIAIICVYWKI---M 237

  Fly   263 TSRRQRIVRDAYSERTADYDVDGDNFISESEHYHCTPTKWLPNRKSRWRFNSLHDPPPSAATNAA 327
            .:.::|..|:.                               :|::..|      |||.|.....
 Worm   238 RAAKKRFKRER-------------------------------DRRTVIR------PPPDAIDEKK 265

  Fly   328 AKGHQSSVKCSKCSKCSSATGTAGAGAGAGVVDKTLTFKHQPTFYELVEVSRLSSLIHCSAISCK 392
            |...:.|.||    ....|...:...|..|...||.:.|:.|...|       ||          
 Worm   266 AMMPKKSKKC----PLPPAVVISDIQANGGTGGKTNSIKNPPRHNE-------SS---------- 309

  Fly   393 YGGPCMHSTPSGMHYVGTEASFSDTCLGGNVSNNTTTTTTNTVALETNEKLEAEAKQKQQQQRSS 457
                   |:.|......|:.:.:.    |:|      ||..|...|.|.:.:....:::::.:.|
 Worm   310 -------SSASEEERTMTQTNHAP----GDV------TTQETKIDEENGRSKPGIVKRRRRTKES 357

  Fly   458 FDHHHPHAHHHGSHGQQSHHNHHHRMPMRVSTTKRDSKTAKTLTIVMGGLIACWLPFFVYYLLIP 522
                                          :..||:.|..:||.|:.|..:|||.|||:..:..|
 Worm   358 ------------------------------NEMKRERKAWRTLAIITGTFVACWTPFFLVSIYRP 392

  Fly   523 FL-----PRPAVLEDLMFGFTWIGWVNCAINPFIYAFYNPDFRTAFWRLTCR 569
            ..     |   |||.:..   |:|::|.|:||.||..::.|||.||.|:..|
 Worm   393 ICGCQISP---VLEQVTL---WLGYLNSALNPIIYTVFSQDFRAAFKRIIKR 438

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TyrRIINP_650651.1 7tm_GPCRs 78..>270 CDD:475119 78/199 (39%)
TM helix 1 78..101 CDD:410628 11/22 (50%)
TM helix 2 110..132 CDD:410628 8/22 (36%)
TM helix 3 148..170 CDD:410628 13/21 (62%)
TM helix 4 194..210 CDD:410628 7/15 (47%)
TM helix 5 233..256 CDD:410628 9/22 (41%)
7tm_GPCRs <491..563 CDD:475119 29/76 (38%)
TM helix 6 497..519 CDD:320098 10/21 (48%)
TM helix 7 531..556 CDD:320098 9/24 (38%)
ser-4NP_497452.1 7tmA_5-HT1A_invertebrates 52..432 CDD:320454 139/499 (28%)
TM helix 1 53..79 CDD:320454 11/25 (44%)
TM helix 2 87..113 CDD:320454 8/25 (32%)
TM helix 3 125..155 CDD:320454 18/29 (62%)
TM helix 4 166..188 CDD:320454 10/22 (45%)
TM helix 5 210..239 CDD:320454 12/31 (39%)
TM helix 6 361..391 CDD:320454 13/29 (45%)
TM helix 7 400..425 CDD:320454 12/30 (40%)

Return to query results.
Submit another query.