DRSC/TRiP Functional Genomics Resources

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Protein Alignment TyrRII and Hrh4

DIOPT Version :10

Sequence 1:NP_650651.1 Gene:TyrRII / 42135 FlyBaseID:FBgn0038541 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_571984.2 Gene:Hrh4 / 170704 RGDID:620631 Length:391 Species:Rattus norvegicus


Alignment Length:570 Identity:124/570 - (21%)
Similarity:199/570 - (34%) Gaps:209/570 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 NSSDGTLLLIQTSAAPGGDVMATGAGAGKLGVPSMNSYLVSMAWPKSLAVAVFLVIILVTVVGNT 93
            :.|:||.:|..|:..|                   .::|:|:     ||.|:        .:||.
  Rat     2 SESNGTDVLPLTAQVP-------------------LAFLMSL-----LAFAI--------TIGNA 34

  Fly    94 LVILAVLTTRRLRTVTNCFVMNLAITDWLVGTCVMPPSVVLYITGT---WRFGWILCDIWISLDI 155
            .||||.:..|.||..:|.|.:||||:|:.||...:|    |||..|   |.||..:|..|:..|.
  Rat    35 AVILAFVADRNLRHRSNYFFLNLAISDFFVGVISIP----LYIPHTLFNWNFGSGICMFWLITDY 95

  Fly   156 LLCSGSILSLCAISLDRYLAVTQPLTYSKKRRSKRLALLMI----LVVWITALSITCPPYL---G 213
            |||:.|:.|:..||.|||.:|:..:.|    |::...:|.|    :.|||.|..:..|..|   .
  Rat    96 LLCTASVYSIVLISYDRYQSVSNAVRY----RAQHTGILKIVAQMVAVWILAFLVNGPMILASDS 156

  Fly   214 WYEVGRHQAEFVDCRYNQNKGYV------VFSAMGSFFIPLTVMLYVYVKIGYVLTSRRQRIVRD 272
            |    ::.....:|    ..|:|      ..:|...|.:|:::::|..|:|              
  Rat   157 W----KNSTNTEEC----EPGFVTEWYILAITAFLEFLLPVSLVVYFSVQI-------------- 199

  Fly   273 AYSERTADYDVDGDNFISESEHYHCTPTKWLPNRKSRWRFNSLHDPPPSA---ATNAAAKGHQSS 334
                                        .|     |.|:..||...|..|   ||::...||   
  Rat   200 ----------------------------YW-----SLWKRGSLSRCPSHAGFIATSSRGTGH--- 228

  Fly   335 VKCSKCSKCSSATGTAGAGAGAGVVDKTLTF-KHQPTFYELVEVSRLSSLIHCSAISCKYGGPCM 398
                     |..||.|...:..|:.:...:. ...|.....:.|| |.:.:..|.|:.|.|..|.
  Rat   229 ---------SRRTGLACRTSLPGLKEPAASLHSESPRGKSSLLVS-LRTHMSGSIIAFKVGSFCR 283

  Fly   399 HSTPSGMHYVGTEASFSDTCLGGNVSNNTTTTTTNTVALETNEKLEAEAKQKQQQQRSSFDHHHP 463
            ..:|                                 .|...|.:|                   
  Rat   284 SESP---------------------------------VLHQREHVE------------------- 296

  Fly   464 HAHHHGSHGQQSHHNHHHRMPMRVSTTKRDSKTAKTLTIVMGGLIACWLPFFVYYLLIPFLPRPA 528
                                      ..|..|.|::|.:::.....||.|:.::.:::....|..
  Rat   297 --------------------------LLRGRKLARSLAVLLSAFAICWAPYCLFTIVLSTYRRGE 335

  Fly   529 VLEDLMFGFT-WIGWVNCAINPFIYAFYNPDFRTAFWRLTCRPICKQKRP 577
            ..:.:.:... |:.|.|..||||:|...:..|:.|||::.|  :.||..|
  Rat   336 RPKSIWYSIAFWLQWFNSLINPFLYPLCHRRFQKAFWKILC--VTKQPAP 383

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TyrRIINP_650651.1 7tm_GPCRs 78..>270 CDD:475119 61/207 (29%)
TM helix 1 78..101 CDD:410628 7/22 (32%)
TM helix 2 110..132 CDD:410628 10/21 (48%)
TM helix 3 148..170 CDD:410628 8/21 (38%)
TM helix 4 194..210 CDD:410628 6/19 (32%)
TM helix 5 233..256 CDD:410628 6/28 (21%)
7tm_GPCRs <491..563 CDD:475119 17/72 (24%)
TM helix 6 497..519 CDD:320098 5/21 (24%)
TM helix 7 531..556 CDD:320098 8/25 (32%)
Hrh4NP_571984.2 7tm_GPCRs 16..376 CDD:475119 115/545 (21%)
TM helix 1 18..42 CDD:410628 11/36 (31%)
TM helix 2 51..73 CDD:410628 11/25 (44%)
TM helix 3 88..110 CDD:410628 8/21 (38%)
TM helix 4 134..150 CDD:410628 4/15 (27%)
TM helix 5 174..197 CDD:410628 4/22 (18%)
TM helix 6 304..326 CDD:410628 5/21 (24%)
TM helix 7 339..364 CDD:410628 8/24 (33%)

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