DRSC/TRiP Functional Genomics Resources

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Protein Alignment TyrRII and htr1b

DIOPT Version :10

Sequence 1:NP_650651.1 Gene:TyrRII / 42135 FlyBaseID:FBgn0038541 Length:586 Species:Drosophila melanogaster
Sequence 2:XP_002936251.2 Gene:htr1b / 100495915 XenbaseID:XB-GENE-988006 Length:385 Species:Xenopus tropicalis


Alignment Length:527 Identity:135/527 - (25%)
Similarity:205/527 - (38%) Gaps:178/527 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 GKLGVPSMNSYLVS--MAWPKSLAVAVFLVIILVTVVGNTLVILAVLTTRRLRTVTNCFVMNLAI 118
            |:..:.|::||...  :::.|.:...:..:|.|.|::.|..||..|..||:|.|..|..:.:||.
 Frog    25 GRSCITSLDSYGQEDVLSFSKIILTVILALITLATLLSNAFVITTVYQTRKLHTPANYLIASLAF 89

  Fly   119 TDWLVGTCVMPPSVVLYITGTWRFGWILCDIWISLDILLCSGSILSLCAISLDRYLAVTQPLTYS 183
            ||.||...|:|.::|..:||.|..|.|:||:|:|.||..|:.|||.||.|:||||.|:|..:.|:
 Frog    90 TDLLVSILVLPIAIVYTVTGKWTLGQIICDMWLSSDITCCTASILHLCVIALDRYWAITDAVEYT 154

  Fly   184 KKRRSKRLALLMILVVWITALSITCPPYLGWYEVGRHQAEFVDCRYNQNK-GYVVFSAMGSFFIP 247
            |||..|| |::||.:||:.::||:.|| |.|.:  ....|...|..|.:. .|.|:|.:|:|:||
 Frog   155 KKRTPKR-AVVMIALVWVFSISISMPP-LFWRQ--SKAEEIAVCAVNTDHILYTVYSTVGAFYIP 215

  Fly   248 LTVMLYVYVKIGYVLTSRRQRIVRDAYSERTADYDVDGDNFISESEHYHCTPTKWLPNRKSRWRF 312
            ..:::.:|   |.:....|.||::.:                                       
 Frog   216 TLLLIALY---GRIYVEARSRILKQS--------------------------------------- 238

  Fly   313 NSLHDPPPSAATNAAAKGH--QSSVKCSKCSKCSSATGTAGAGAGAGVVDKTLTFKHQPTFYELV 375
                   |........|.|  ..|...|..|..:|.|....:.||:            |.:...|
 Frog   239 -------PKTTGKRLTKAHLITDSPGSSSVSSTNSRTLEMPSDAGS------------PVYLNQV 284

  Fly   376 EVSRLSSLIHCSAISCKYGGPCMHSTPSGMHYVGTEASFSDTCLGGNVSNNTTTTTTNTVALETN 440
            :|                                            .||:          ||...
 Frog   285 KV--------------------------------------------KVSD----------ALLEK 295

  Fly   441 EKLEAEAKQKQQQQRSSFDHHHPHAHHHGSHGQQSHHNHHHRMPMRVSTTKRDSKTAKTLTIVMG 505
            :|:.|                                             .|:.|..|||.:::|
 Frog   296 KKIMA---------------------------------------------ARERKATKTLGVILG 315

  Fly   506 GLIACWLPFFVYYLLIPFLP-----RPAVLEDLMFGFTWIGWVNCAINPFIYAFYNPDFRTAFWR 565
            ..|.||||||:..|::|...     .||:.:    .|.|:|::|..|||.||...|.||:.||.:
 Frog   316 AYIVCWLPFFIISLVMPICKDACWFHPAIFD----FFNWLGYLNSLINPIIYTMSNEDFKQAFHK 376

  Fly   566 LTCRPIC 572
            |..|..|
 Frog   377 LINRFKC 383

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TyrRIINP_650651.1 7tm_GPCRs 78..>270 CDD:475119 76/192 (40%)
TM helix 1 78..101 CDD:410628 7/22 (32%)
TM helix 2 110..132 CDD:410628 9/21 (43%)
TM helix 3 148..170 CDD:410628 12/21 (57%)
TM helix 4 194..210 CDD:410628 6/15 (40%)
TM helix 5 233..256 CDD:410628 7/23 (30%)
7tm_GPCRs <491..563 CDD:475119 29/76 (38%)
TM helix 6 497..519 CDD:320098 11/21 (52%)
TM helix 7 531..556 CDD:320098 9/24 (38%)
htr1bXP_002936251.2 7tmA_5-HT1B_1D 42..374 CDD:320455 126/499 (25%)
TM helix 1 47..73 CDD:320455 7/25 (28%)
TM helix 2 80..106 CDD:320455 10/25 (40%)
TM helix 3 118..148 CDD:320455 18/29 (62%)
TM helix 4 160..183 CDD:320455 12/24 (50%)
TM helix 5 200..229 CDD:320455 9/31 (29%)
TM helix 6 301..331 CDD:320455 14/29 (48%)
TM helix 7 342..367 CDD:320455 11/28 (39%)

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