DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TyrRII and chrm3

DIOPT Version :10

Sequence 1:NP_650651.1 Gene:TyrRII / 42135 FlyBaseID:FBgn0038541 Length:586 Species:Drosophila melanogaster
Sequence 2:XP_002935876.2 Gene:chrm3 / 100493547 XenbaseID:XB-GENE-940647 Length:588 Species:Xenopus tropicalis


Alignment Length:571 Identity:143/571 - (25%)
Similarity:232/571 - (40%) Gaps:141/571 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 WPKSLAVAVFLVIILVTVVGNTLVILAVLTTRRLRTVTNCFVMNLAITDWLVGTCVMPPSVVLYI 136
            |...|..:...:|.||||:||.|||||....::|:||.|.|:::||..|.::|...|.......|
 Frog    75 WQVFLIASFSGIIALVTVIGNILVILAFKVNKQLKTVNNYFLLSLACADLIIGVISMNLFTTYII 139

  Fly   137 TGTWRFGWILCDIWISLDILLCSGSILSLCAISLDRYLAVTQPLTYSKKRRSKRLALLMILVVWI 201
            ...|..|.:.||:|:.:|.:..:.|:::|..||.|||.::|:||||..||.:|| |.:||.:.||
 Frog   140 MDHWIMGSLACDLWLMIDYVASNASVMNLLVISFDRYFSITRPLTYRTKRTTKR-AGIMIGLAWI 203

  Fly   202 TALSITCPPYLGW-YEVGRHQAEFVDCRYNQNKGYVVF---------SAMGSFFIPLTVMLYVYV 256
            .:..:..|..|.| |.||:......:|       ::.|         :|:.:|::|:::|..:|.
 Frog   204 ISFILWAPAILFWQYFVGKRTVPSDEC-------FIQFFTEPIITFGTAIAAFYLPVSIMTILYW 261

  Fly   257 KIGYVLTSRRQRIV-----------------RDAYSERTADYDVDGD-NFISESEHYHCT----P 299
            :| |..|.:|.:.:                 |...::..::|.:..: .|.|.:.:..||    |
 Frog   262 RI-YKETEKRTKELAGLQASGGKLEVPGLSHRTGNAKGNSNYKIQRNIKFSSRTRYSWCTFRFKP 325

  Fly   300 TKWLPNRK---------SRWRFNSLH------------DPP--PSAATNAAAK--GHQSSVKCSK 339
            .....::|         ..|..|..:            |.|  |.|..:...|  ||.|.:  ||
 Frog   326 KMCKSDKKQIEQDQSSSESWNHNDANASLDNSGTSDEEDAPENPRAIYSIVLKLPGHNSVL--SK 388

  Fly   340 CSKCSSATGTAGAG-AGAGVVDKTLTFKHQPTFYELVEVSRLSSLIHCSAISCKYGGPCMHSTPS 403
            ....||..|....| ..:|...|.|.||:      |.....|.:.....::|.         :|.
 Frog   389 TKSQSSNQGNTSKGMQKSGPQPKELRFKN------LNSQRNLQNKDESISVSL---------SPQ 438

  Fly   404 GMHYVGTEASFSDTCLGGNVSNNTTTTTTNTVALETNEKLEAE---AKQKQQQQRSSFDHHHPHA 465
            ..|                 |.||::.||..:.:...|...|:   ||.:.|..:..        
 Frog   439 TDH-----------------SMNTSSKTTAPLPISFKEIALAKRFAAKTRNQITKRK-------- 478

  Fly   466 HHHGSHGQQSHHNHHHRMPMRVSTTKRDSKTAKTLTIVMGGLIACWLPFFVYYLLIPFLPR--PA 528
                                |:|..| :.|.|:||:.::...|..|.|:.:..|:..|...  |.
 Frog   479 --------------------RMSLIK-EKKAAQTLSAILLAFIITWAPYNIMVLVNTFCESCIPR 522

  Fly   529 VLEDLMFGFTWIGWVNCAINPFIYAFYNPDFRTAFWRL---TCRPICKQKR 576
            :..:|.:   |:.::|..|||..||..|..|||.|..|   .|..|.::|:
 Frog   523 IYWNLGY---WLCYINSTINPICYALCNKTFRTTFKILLLCQCDKIKRRKK 570

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TyrRIINP_650651.1 7tm_GPCRs 78..>270 CDD:475119 67/201 (33%)
TM helix 1 78..101 CDD:410628 12/22 (55%)
TM helix 2 110..132 CDD:410628 7/21 (33%)
TM helix 3 148..170 CDD:410628 6/21 (29%)
TM helix 4 194..210 CDD:410628 4/15 (27%)
TM helix 5 233..256 CDD:410628 5/31 (16%)
7tm_GPCRs <491..563 CDD:475119 23/73 (32%)
TM helix 6 497..519 CDD:320098 6/21 (29%)
TM helix 7 531..556 CDD:320098 8/24 (33%)
chrm3XP_002935876.2 7tmA_mAChR_M3 75..>279 CDD:320426 69/212 (33%)
TM helix 1 79..105 CDD:320426 13/25 (52%)
TM helix 2 112..139 CDD:320426 7/26 (27%)
TM helix 3 150..180 CDD:320426 11/29 (38%)
TM helix 4 192..215 CDD:320426 8/23 (35%)
TM helix 5 237..266 CDD:320426 7/29 (24%)
7tm_GPCRs <483..563 CDD:475119 25/83 (30%)
TM helix 6 489..511 CDD:320426 6/21 (29%)
TM helix 7 522..547 CDD:320426 8/27 (30%)

Return to query results.
Submit another query.