DRSC/TRiP Functional Genomics Resources

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Protein Alignment TyrRII and htr1fa

DIOPT Version :10

Sequence 1:NP_650651.1 Gene:TyrRII / 42135 FlyBaseID:FBgn0038541 Length:586 Species:Drosophila melanogaster
Sequence 2:XP_021334563.1 Gene:htr1fa / 100005344 ZFINID:ZDB-GENE-081105-125 Length:363 Species:Danio rerio


Alignment Length:532 Identity:133/532 - (25%)
Similarity:203/532 - (38%) Gaps:182/532 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 TSAAPGGDVMATGAGAGKLGVPSMNSYLVSMAWPKSLAVAVFLVIILVTVVGNTLVILAVLTTRR 104
            :|.:.|.|...||        ||.|:..|.:     |::.:..:.||.|.: |.|||.|::.||:
Zfish     2 SSNSAGMDSNHTG--------PSKNNGDVVL-----LSLTLSFLAILTTAM-NCLVITAIIVTRK 52

  Fly   105 LRTVTNCFVMNLAITDWLVGTCVMPPSVVLYITGTWRFGWILCDIWISLDILLCSGSILSLCAIS 169
            |...:|..:.:||:||.||...|||.|::.....||..|..||..|:|:||..|:.|||.|.||:
Zfish    53 LHHPSNYLICSLAVTDLLVAILVMPFSIIYIAKDTWLIGEALCKFWLSVDITCCTCSILHLAAIA 117

  Fly   170 LDRYLAVTQPLTYSKKRRSKRLALLMILVVWITALSITCPPYLGWYEVGRHQAEFVDC-RYNQNK 233
            :|||.|:|..:.||:||.|.| |.:||.|||:.|:.|:.||.|      ....|..:| ..:.|.
Zfish   118 VDRYRAITDAVEYSRKRTSLR-AAIMISVVWLLAIVISLPPIL------LRNGEENECIIVHTNI 175

  Fly   234 GYVVFSAMGSFFIPLTVMLYVYVKIGYVLTSRRQRIVRDAYSERTADYDVDGDNFISESEHYHCT 298
            ..:::|..|:|:|||.::|.:|.||        .|..:..|..|..                   
Zfish   176 ASMLYSTFGAFYIPLILILILYYKI--------YRAAKTLYHRRRT------------------- 213

  Fly   299 PTKWLPNRKSRWRFNSLHDPPPSAATNAAAKGHQSSVKCSKCSKCSSATGTAGAGAGAGVVDKTL 363
                                  |....:...||.       ..|||.                  
Zfish   214 ----------------------SCLNKSEMNGHM-------LPKCSD------------------ 231

  Fly   364 TFKHQPTFYELVEVSRLSSLIHCSAISCKYGGPCMHSTPSGMHYVGTEASFSDTCLGGNVSNNTT 428
               .:||                              ||..:.  ..|.|.|:....|       
Zfish   232 ---REPT------------------------------TPDTLS--PPEKSMSEPSTEG------- 254

  Fly   429 TTTTNTVALETNEKLEAEAKQKQQQQRSSFDHHHPHAHHHGSHGQQSHHNHHHRMPMRVSTTKRD 493
                        :::...|:..:.::..|...|                        |:|.. |:
Zfish   255 ------------DRVRITARSPKSRRERSLRRH------------------------RISNI-RE 282

  Fly   494 SKTAKTLTIVMGGLIACWLPFF----VYYLLIPFLPRPAVLEDLMFGFTWIGWVNCAINPFIYAF 554
            .|.|.||.:::|..:.||||||    :|.:......|...:.:.:   ||:|::|..|||.||..
Zfish   283 KKAATTLGLIIGAFVVCWLPFFIHEVIYNICTVSCSRSVAVTNFL---TWLGYLNSLINPLIYTI 344

  Fly   555 YNPDFRTAFWRL 566
            :|.||:.||.::
Zfish   345 FNEDFKRAFQKI 356

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TyrRIINP_650651.1 7tm_GPCRs 78..>270 CDD:475119 74/192 (39%)
TM helix 1 78..101 CDD:410628 8/22 (36%)
TM helix 2 110..132 CDD:410628 10/21 (48%)
TM helix 3 148..170 CDD:410628 11/21 (52%)
TM helix 4 194..210 CDD:410628 7/15 (47%)
TM helix 5 233..256 CDD:410628 7/22 (32%)
7tm_GPCRs <491..563 CDD:475119 26/75 (35%)
TM helix 6 497..519 CDD:320098 11/25 (44%)
TM helix 7 531..556 CDD:320098 9/24 (38%)
htr1faXP_021334563.1 7tm_GPCRs 23..354 CDD:475119 123/499 (25%)
TM helix 1 25..49 CDD:410628 9/24 (38%)
TM helix 2 58..80 CDD:410628 10/21 (48%)
TM helix 3 96..118 CDD:410628 11/21 (52%)
TM helix 4 141..157 CDD:410628 7/15 (47%)
TM helix 5 175..198 CDD:410628 7/22 (32%)
TM helix 6 286..308 CDD:410628 10/21 (48%)
TM helix 7 321..346 CDD:410628 9/27 (33%)

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