DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lgr1 and rxfp2a

DIOPT Version :9

Sequence 1:NP_524393.2 Gene:Lgr1 / 42133 FlyBaseID:FBgn0016650 Length:831 Species:Drosophila melanogaster
Sequence 2:NP_001315313.1 Gene:rxfp2a / 792884 ZFINID:ZDB-GENE-040426-1225 Length:754 Species:Danio rerio


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lgr1NP_524393.2 leucine-rich repeat 182..207 CDD:275380
leucine-rich repeat 208..231 CDD:275380
leucine-rich repeat 233..256 CDD:275380
leucine-rich repeat 257..277 CDD:275380
LRR_8 258..313 CDD:290566
leucine-rich repeat 278..302 CDD:275380
leucine-rich repeat 303..323 CDD:275380
leucine-rich repeat 324..346 CDD:275380
7tm_1 505..756 CDD:278431
rxfp2aNP_001315313.1 LDLa 42..77 CDD:238060
leucine-rich repeat 136..159 CDD:275380
LRR_8 158..218 CDD:290566
leucine-rich repeat 160..183 CDD:275380
leucine-rich repeat 184..207 CDD:275380
leucine-rich repeat 208..231 CDD:275380
leucine-rich repeat 232..256 CDD:275380
LRR_8 255..315 CDD:290566
leucine-rich repeat 257..280 CDD:275380
leucine-rich repeat 281..304 CDD:275380
LRR_8 304..360 CDD:290566
leucine-rich repeat 305..328 CDD:275380
leucine-rich repeat 329..352 CDD:275380
leucine-rich repeat 353..371 CDD:275380
7tm_4 422..>647 CDD:304433
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.