DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lgr1 and RXFP1

DIOPT Version :9

Sequence 1:NP_524393.2 Gene:Lgr1 / 42133 FlyBaseID:FBgn0016650 Length:831 Species:Drosophila melanogaster
Sequence 2:NP_001240656.1 Gene:RXFP1 / 59350 HGNCID:19718 Length:784 Species:Homo sapiens


Alignment Length:807 Identity:170/807 - (21%)
Similarity:298/807 - (36%) Gaps:262/807 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    88 PLTATMPRSAWKCCCWNASNQAEEVECRCEGDGLNRVPQTLT--------------LP------- 131
            ||.:.:.....:|.|       :.:|..|:...|..||...:              ||       
Human   119 PLDSVVGSVPVQCLC-------QGLELDCDETNLRAVPSVSSNVTAMSLQWNLIRKLPPDCFKNY 176

  Fly   132 --IQRLTIASAGLPRLRHTGLKVY---GSTLLDVAFTDCLQLELIQDGAFANLTLLRTIYITNAP 191
              :|:|.:.:..:     |.:.:|   |...|...:....::..::.|.|.:|..|..:.|.: .
Human   177 HDLQKLYLQNNKI-----TSISIYAFRGLNSLTKLYLSHNRITFLKPGVFEDLHRLEWLIIED-N 235

  Fly   192 KLTFLSKDVFLGISDTVDIIRIINSGLTRVPD---LGHLPPHNILQMIDLDNNQI------TRID 247
            .|:.:|...|.|::..: ::.::|:.|||:||   ..|:|.   |..:||:.|.|      |.|.
Human   236 HLSRISPPTFYGLNSLI-LLVLMNNVLTRLPDKPLCQHMPR---LHWLDLEGNHIHNLRNLTFIS 296

  Fly   248 SKSIKVKTAQLILTNNEISYVDDSAFFG-SKIAKLSLKENKKLQMMHPNAFDGIIDITELDLSST 311
            ..::.|    |::..|:|::::::.|.. .|:.:|.|..| |::.:.|..|..:.::::|:||..
Human   297 CSNLTV----LVMRKNKINHLNENTFAPLQKLDELDLGSN-KIENLPPLIFKDLKELSQLNLSYN 356

  Fly   312 S-----------LVGLPSAGLQNIEALYIQNTHTLKTIPSIYNFRNLQRAYLTHSFHCCAFQFPS 365
            .           ||.|.|..|:.||...||                                   
Human   357 PIQKIQANQFDYLVKLKSLSLEGIEISNIQ----------------------------------- 386

  Fly   366 RHDPQRHAQRMLEIEKWRKQCKSDSGTRKERSTLDNPFNMPEDFGSFGGTDDSATDITPITFASF 430
                    |||..                                       ...:::.|.|..|
Human   387 --------QRMFR---------------------------------------PLMNLSHIYFKKF 404

  Fly   431 DYMADDTMNKGTFHEKIILNPGDDSSAELCGNFTFRKPNI-ECYPMPNDLNPCEDVMGYQWLRIS 494
            .|                           ||    ..|:: .|.|..:.::..|:::.....|:.
Human   405 QY---------------------------CG----YAPHVRSCKPNTDGISSLENLLASIIQRVF 438

  Fly   495 VWIVVALAVVGNVAVLTVILSIRPESTPVPRFLMCHLAFADLCLGLYLLLVACIDAHSMGEYFNF 559
            ||:|.|:...||:.|:.:...||.|: .:....:..|..||..:|:||.::...|....|||...
Human   439 VWVVSAVTCFGNIFVICMRPYIRSEN-KLYAMSIISLCCADCLMGIYLFVIGGFDLKFRGEYNKH 502

  Fly   560 AYDWQYGLGCKVAGFLTVFASHLSVFTLTVITIERWLAITQAMYLNHRIKLRPAALIMLGGWIYS 624
            |..|.....|::.|.|.:.::.:||..||.:|:|:::.|..........|.|...:::| .||..
Human   503 AQLWMESTHCQLVGSLAILSTEVSVLLLTFLTLEKYICIVYPFRCVRPGKCRTITVLIL-IWITG 566

  Fly   625 MLMSSLPL----FGISNYSSTSICLPMENRD---VYDTIYLIAI-LGSNGVAFSIIAVCYAQIYL 681
            .:::.:||    |..:.|.:..:|.|:.:.|   :...||.:|| ||.|..||.||...|..::.
Human   567 FIVAFIPLSNKEFFKNYYGTNGVCFPLHSEDTESIGAQIYSVAIFLGINLAAFIIIVFSYGSMFY 631

  Fly   682 SLGRETRQAHQNS----------PGELSVAKKMALLVFTNFACWSPI---AFFGLTALAGYPLIN 733
            |:       ||::          ..|:.:||:...:|||:..||.||   .|..|..:.    |.
Human   632 SV-------HQSAITATEIRNQVKKEMILAKRFFFIVFTDALCWIPIFVVKFLSLLQVE----IP 685

  Fly   734 VTKSKILLVFFYPLNSCADPYLYAILTS-----------QYRQ---------------------- 765
            .|.:..:::|..|:||..:|.||.:.|.           .|||                      
Human   686 GTITSWVVIFILPINSALNPILYTLTTRPFKEMIHRFWYNYRQRKSMDSKGQKTYAPSFIWVEMW 750

  Fly   766 ------------DLFTLLSKLGLCQQS 780
                        ||||...::.|..||
Human   751 PLQEMPPELMKPDLFTYPCEMSLISQS 777

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lgr1NP_524393.2 leucine-rich repeat 182..207 CDD:275380 6/24 (25%)
leucine-rich repeat 208..231 CDD:275380 8/25 (32%)
leucine-rich repeat 233..256 CDD:275380 8/28 (29%)
leucine-rich repeat 257..277 CDD:275380 4/20 (20%)
LRR_8 258..313 CDD:290566 14/66 (21%)
leucine-rich repeat 278..302 CDD:275380 6/23 (26%)
leucine-rich repeat 303..323 CDD:275380 8/30 (27%)
leucine-rich repeat 324..346 CDD:275380 4/21 (19%)
7tm_1 505..756 CDD:278431 74/271 (27%)
RXFP1NP_001240656.1 LDLa 27..62 CDD:238060
leucine-rich repeat 155..178 CDD:275380 2/22 (9%)
LRR_8 179..237 CDD:290566 11/63 (17%)
leucine-rich repeat 179..202 CDD:275380 5/27 (19%)
LRR_RI <196..358 CDD:238064 41/171 (24%)
leucine-rich repeat 203..226 CDD:275380 4/22 (18%)
LRR_8 226..286 CDD:290566 18/64 (28%)
leucine-rich repeat 227..250 CDD:275380 6/23 (26%)
leucine-rich repeat 251..275 CDD:275380 7/24 (29%)
LRR_8 274..334 CDD:290566 17/67 (25%)
leucine-rich repeat 276..299 CDD:275380 7/22 (32%)
leucine-rich repeat 300..323 CDD:275380 5/26 (19%)
LRR_8 323..379 CDD:290566 15/56 (27%)
leucine-rich repeat 324..347 CDD:275380 6/23 (26%)
leucine-rich repeat 348..371 CDD:275380 4/22 (18%)
leucine-rich repeat 372..393 CDD:275380 10/102 (10%)
7tm_1 451..708 CDD:278431 72/269 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2087
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.