DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lgr1 and Lgr4

DIOPT Version :9

Sequence 1:NP_524393.2 Gene:Lgr1 / 42133 FlyBaseID:FBgn0016650 Length:831 Species:Drosophila melanogaster
Sequence 2:NP_001285192.1 Gene:Lgr4 / 5740505 FlyBaseID:FBgn0085440 Length:809 Species:Drosophila melanogaster


Alignment Length:681 Identity:171/681 - (25%)
Similarity:266/681 - (39%) Gaps:183/681 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   218 LTRVPDLGHLPPHNILQMIDLDNN-----------QITRIDSKSIKVKTAQLI-------LTNNE 264
            ||.:|:  .||.|: |..:||..|           ::..:||..:|..:.:.|       |.:|.
  Fly   176 LTDIPE--RLPQHD-LATLDLTGNNFETIHETFFSELPDVDSLVLKFCSIREIASHAFDRLADNP 237

  Fly   265 IS--YVDDSA-------FF--GSKIAKLSLKENKKLQMMHPNAFDGIIDITELDLSSTSLVGLPS 318
            :.  |:||:.       ||  |::::.|.|..| .|..:..:.|..:..:.||||....:....:
  Fly   238 LRTLYMDDNKLPHLPEHFFPEGNQLSILILARN-HLHHLKRSDFLNLQKLQELDLRGNRIGNFEA 301

  Fly   319 ---AGLQNIEALYIQNTHTLKTIPSIYNFRNLQRAYLTHSFHCCAFQFPSRHDPQRHAQRMLEIE 380
               |.|.|:|.||:...| ||                             |.||.|..:.:|.:.
  Fly   302 EVFARLPNLEVLYLNENH-LK-----------------------------RLDPDRFPRTLLNLH 336

  Fly   381 KWRKQCKSDSGTRKERSTLDNPFNMPEDFGSFGGTDDSATDITPITFASFDYMA--------DDT 437
                             ||...:|..||.         |.:..|.....:.::|        |:|
  Fly   337 -----------------TLSLAYNQIEDI---------AANTFPFPRLRYLFLAGNRLSHIRDET 375

  Fly   438 MNKGTFHEKIILN----PGDD----------SSAELCGN--------------------FTF--- 465
            ....:..:.:.||    .|.|          ||..|.||                    |::   
  Fly   376 FCNLSNLQGLHLNENRIEGFDLEAFACLKNLSSLLLTGNRFQTLDSRVLKNLTSLDYIYFSWFHL 440

  Fly   466 --RKPNIE-CYPMPNDLNPCEDVMGYQWLRISVWIVVALAVVGNVAVLTVILSIRPESTPVPRFL 527
              ...|:. |.|..:.::....::..|.||.|||::.::|||||:.||......:..|.......
  Fly   441 CSAAMNVRVCDPHGDGISSKLHLLDNQILRGSVWVMASIAVVGNLLVLLGRYFYKSRSNVEHSLY 505

  Fly   528 MCHLAFADLCLGLYLLLVACIDAHSMGEYFNFAYDWQYGLGCKVAGFLTVFASHLSVFTLTVITI 592
            :.|||.:|..:|:||.|:||.|....|||..:...|::...|..||||:.|:...|...||::|.
  Fly   506 LRHLAASDFLMGIYLTLIACADISFRGEYIKYEETWRHSGVCAFAGFLSTFSCQSSTLLLTLVTW 570

  Fly   593 ERWLAITQAMYLNH----RIKLRPAALIMLGGWIYSMLMSSL---PLFGISNYSSTSICLPMENR 650
            :|.:::|:.:....    ||.||   |::|.|..:.:..:.|   |.||...|.:..:||.:...
  Fly   571 DRLMSVTRPLKPRDTEKVRIVLR---LLLLWGISFGLAAAPLLPNPYFGSHFYGNNGVCLSLHIH 632

  Fly   651 DVY--------------DTIYLIAILGSNGVAFSIIAVCYAQIYLSLGRETRQAHQNSPGELSVA 701
            |.|              :|:.||.||      ||.|.:  .|.....|...|..|  |..|..||
  Fly   633 DPYAKGWEYSALLFILVNTLSLIFIL------FSYIRM--LQAIRDSGGGMRSTH--SGRENVVA 687

  Fly   702 KKMALLVFTNFACWSPIAFFGLTALAGYPLINVTKSKILLVFFYPLNSCADPYLYAILTSQYRQD 766
            .:.|::|.|:.|||.||....|.||:|.. |:......|.|...|:||..:|.||.:.|:.::|.
  Fly   688 TRFAIIVTTDCACWLPIIVVKLAALSGCE-ISPDLYAWLAVLVLPVNSALNPVLYTLTTAAFKQQ 751

  Fly   767 LFTLLSKLGLC--------QQSALKYKDSLS 789
            |......|..|        .|:...|:..||
  Fly   752 LRRYCHTLPSCSLVNNETRSQTQTAYESGLS 782

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lgr1NP_524393.2 leucine-rich repeat 182..207 CDD:275380
leucine-rich repeat 208..231 CDD:275380 5/12 (42%)
leucine-rich repeat 233..256 CDD:275380 7/33 (21%)
leucine-rich repeat 257..277 CDD:275380 9/37 (24%)
LRR_8 258..313 CDD:290566 18/72 (25%)
leucine-rich repeat 278..302 CDD:275380 5/23 (22%)
leucine-rich repeat 303..323 CDD:275380 6/22 (27%)
leucine-rich repeat 324..346 CDD:275380 6/21 (29%)
7tm_1 505..756 CDD:278431 83/271 (31%)
Lgr4NP_001285192.1 Ldl_recept_a 87..124 CDD:278486
LRR_RI <184..397 CDD:238064 54/270 (20%)
LRR_8 188..248 CDD:290566 13/59 (22%)
leucine-rich repeat 188..211 CDD:275380 4/22 (18%)
leucine-rich repeat 212..235 CDD:275380 5/22 (23%)
leucine-rich repeat 238..261 CDD:275380 6/22 (27%)
LRR_8 261..320 CDD:290566 16/60 (27%)
leucine-rich repeat 262..285 CDD:275380 5/23 (22%)
LRR_4 284..325 CDD:289563 14/70 (20%)
leucine-rich repeat 286..309 CDD:275380 6/22 (27%)
LRR_4 308..348 CDD:289563 16/86 (19%)
leucine-rich repeat 310..334 CDD:275380 10/53 (19%)
leucine-rich repeat 335..357 CDD:275380 7/47 (15%)
LRR_8 356..416 CDD:290566 12/59 (20%)
leucine-rich repeat 358..381 CDD:275380 3/22 (14%)
LRR_4 381..421 CDD:289563 9/39 (23%)
leucine-rich repeat 382..405 CDD:275380 4/22 (18%)
leucine-rich repeat 406..427 CDD:275380 5/20 (25%)
7tm_1 483..741 CDD:278431 83/271 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2087
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24372
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.910

Return to query results.
Submit another query.