DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lgr1 and rxfp2b

DIOPT Version :9

Sequence 1:NP_524393.2 Gene:Lgr1 / 42133 FlyBaseID:FBgn0016650 Length:831 Species:Drosophila melanogaster
Sequence 2:NP_001315011.1 Gene:rxfp2b / 566888 ZFINID:ZDB-GENE-110408-27 Length:750 Species:Danio rerio


Alignment Length:750 Identity:164/750 - (21%)
Similarity:281/750 - (37%) Gaps:243/750 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 CCCWNASNQAEEVECRCEGDGLNRVPQT--------------LTLP---------IQRLTI---- 137
            |.|.|       .|..|....|..:||.              .|||         :|||.:    
Zfish   109 CRCIN-------TEIHCVHASLRSIPQVSANVTSLSLKSNKIRTLPDEAFIKYIKLQRLFLQDNC 166

  Fly   138 -------ASAGLPRLRHTGLKVYGSTLLDVAFTDCLQLELIQDGAFANLTLLRTIYITNAPKLTF 195
                   |.:||.:|:...|...             .:.|:..|.|.:|..|:.:.:.:.| :|.
Zfish   167 INTVSIQAFSGLYKLQKLSLSQN-------------SISLLSPGVFRDLRKLKWLILDDNP-ITT 217

  Fly   196 LSKDVFLGISDTVDIIRIINSGLTRVPD---LGHLPPHNILQMIDLDNNQITRID---------- 247
            ::.:.|.|:| ::..:.::|:.|..:|.   ..|:|   .|..:|.:.|.||.:.          
Zfish   218 IAANTFAGLS-SLFFLSMVNTSLEALPSARLCAHMP---FLSWLDFEGNSITTLGLSTLLDCEHL 278

  Fly   248 ---------SKSIKVKTAQ-------LILTNNEISYVDDSAFFGSK-IAKLSLKENKKLQMMHPN 295
                     .||:...|.|       |.|:||.|..:....|...: :..|:|.:| .|..:||.
Zfish   279 TVLSLRANLIKSLPENTFQSLRMMGDLDLSNNSIKELPVGIFKDLRSLQSLNLSQN-PLDHIHPG 342

  Fly   296 AFDGIIDITELDLSSTSLVGLPSAGLQNIEALYIQNTHTLKTIPSIYNFRNLQRAYLTHSFHCCA 360
            .|:             .|:.|.|.||:.:|            ||:|.          |..|.   
Zfish   343 QFN-------------HLIQLQSLGLEGVE------------IPNIQ----------TSMFR--- 369

  Fly   361 FQFPSRHDPQRHAQRMLEIEKWRKQCKSDSGTRKERSTLDNPFNMPEDFGSFGGTDDSATDITPI 425
                                                 .:||                    ::.|
Zfish   370 -------------------------------------PMDN--------------------LSYI 377

  Fly   426 TFASFDYMADDTMNKGTFHEKIILNPGDDSSAELCGNFTFRKPNI-ECYPMPNDLNPCEDVMGYQ 489
            .|..|.|.:                               ..|:: :|.|..:.|:..||::...
Zfish   378 YFKKFQYCS-------------------------------YAPHVRKCKPNSDGLSSFEDLLANV 411

  Fly   490 WLRISVWIVVALAVVGNVAVLTVILSIRPESTPVPRFLMCHLAFADLCLGLYLLLVACIDAHSMG 554
            .||:|||::..:...||:.|:.:...:|.|:. :..|.:..|..||..:|:||..|...|....|
Zfish   412 VLRVSVWVMAFITCFGNLFVIGMRTVLRAENN-LHAFCIKVLCCADCLMGVYLFFVGIFDVKFRG 475

  Fly   555 EYFNFAYDWQYGLGCKVAGFLTVFASHLSVFTLTVITIERWLAITQAMYLNHRIKLRPAA----L 615
            ||...|..|...|.|:..|||.:.:|.:||..||.:|:|::|.|  ....:|   |||:.    .
Zfish   476 EYNKNAKVWMESLECRTIGFLAMLSSEVSVMLLTYLTLEKFLVI--VFPFSH---LRPSKCQTFT 535

  Fly   616 IMLGGWIYSMLMSSLPL-----FGISNYSSTSICLPMENRDVYDTI---YLIAI-LGSNGVAFSI 671
            :::..|:..:.::::||     || :.|....:|.|:.:..:...:   |...| ||.|.:||.|
Zfish   536 VLVSIWLLGISIAAVPLLNEDTFG-NYYGLNGVCFPLHSERLEKPVAKGYSTGIFLGLNLLAFLI 599

  Fly   672 IAVCYAQIYLSLGRETRQAHQNSPGEL----SVAKKMALLVFTNFACWSPIAFFGLTALAGYPLI 732
            |.|.|:.::.|:.:...:|.: .||.|    ::|.:...:||::..||.||....:.:|....:.
Zfish   600 IVVSYSSMFYSIYKTGIRATE-LPGRLHRDVAMAHRFFFIVFSDALCWIPIFMVKILSLLEVEIP 663

  Fly   733 NVTKSKILLVFFYPLNSCADPYLYAILTSQYRQDL 767
            ....|.: ::|..|:||..:|.||.:.||.:|:.:
Zfish   664 GTITSWV-VIFILPINSALNPILYTLTTSFFREQV 697

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lgr1NP_524393.2 leucine-rich repeat 182..207 CDD:275380 6/24 (25%)
leucine-rich repeat 208..231 CDD:275380 5/25 (20%)
leucine-rich repeat 233..256 CDD:275380 7/41 (17%)
leucine-rich repeat 257..277 CDD:275380 7/26 (27%)
LRR_8 258..313 CDD:290566 13/55 (24%)
leucine-rich repeat 278..302 CDD:275380 7/23 (30%)
leucine-rich repeat 303..323 CDD:275380 5/19 (26%)
leucine-rich repeat 324..346 CDD:275380 4/21 (19%)
7tm_1 505..756 CDD:278431 75/267 (28%)
rxfp2bNP_001315011.1 LDLa 39..74 CDD:238060
leucine-rich repeat 114..132 CDD:275380 5/17 (29%)
LRR_RI 130..360 CDD:238064 54/273 (20%)
leucine-rich repeat 133..156 CDD:275380 3/22 (14%)
LRR_8 156..215 CDD:290566 14/72 (19%)
leucine-rich repeat 157..180 CDD:275380 6/22 (27%)
leucine-rich repeat 181..204 CDD:275380 6/35 (17%)
LRR_8 203..288 CDD:290566 16/89 (18%)
leucine-rich repeat 205..228 CDD:275380 6/24 (25%)
leucine-rich repeat 229..253 CDD:275380 5/26 (19%)
leucine-rich repeat 254..277 CDD:275380 5/22 (23%)
LRR_8 277..336 CDD:290566 13/59 (22%)
leucine-rich repeat 278..301 CDD:275380 4/22 (18%)
leucine-rich repeat 302..325 CDD:275380 6/22 (27%)
LRR_8 324..378 CDD:290566 20/149 (13%)
leucine-rich repeat 326..349 CDD:275380 8/36 (22%)
leucine-rich repeat 350..369 CDD:275380 9/40 (23%)
7tm_4 419..>556 CDD:304433 40/142 (28%)
7tm_1 <487..686 CDD:278431 56/206 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2087
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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