DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lgr1 and Lgr3

DIOPT Version :10

Sequence 1:NP_524393.2 Gene:Lgr1 / 42133 FlyBaseID:FBgn0016650 Length:831 Species:Drosophila melanogaster
Sequence 2:NP_733115.1 Gene:Lgr3 / 43098 FlyBaseID:FBgn0039354 Length:765 Species:Drosophila melanogaster


Alignment Length:803 Identity:178/803 - (22%)
Similarity:312/803 - (38%) Gaps:197/803 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 LTAVSLAQSTDTPLTATMPRSAWKCCCWNASNQAEEVECRCE----------GDG---------- 120
            ::|||.|...|: .|:.:||           ||:..:...|:          |.|          
  Fly    95 ISAVSNASGADS-TTSMVPR-----------NQSLTLNMTCDIVTYPKACQCGQGTILYCGRYAK 147

  Fly   121 LNRVPQTLTLPIQRLTIASAGLPRLRHTGLKVYGSTLLDVAFTDCLQLE----------LIQDGA 175
            |.|.|: |:..:..|.|....|             ||.|..|.:..:|:          .:..|:
  Fly   148 LRRFPR-LSSEVTNLIIIRNNL-------------TLRDNIFANFTRLQKLTLKYNNISRVPLGS 198

  Fly   176 FANLTLLRTIYITNAPKLTFLSKDVFLGISDTVDIIRIINSGLTRVPDLGHLPPHNI-----LQM 235
            |:.|..|..:.::: ..::.|...||||: .::..:.::|:      .|.|||...:     |:.
  Fly   199 FSGLFHLERLELSH-NNVSHLPHGVFLGL-HSLQWLFLVNN------HLHHLPVEQLRFFRRLEW 255

  Fly   236 IDLDNNQITRIDSKSIKVKTA-QLILTNNEISYVDDSAFFGSKIAKLSL--KENKKLQMMHPNAF 297
            :.|..|::|..:.:..|:.|. ::.|..|.|.|:.:..|  |::..|.|  .::..:..:|..||
  Fly   256 LVLSRNRLTLRNVQLPKIPTLYEVYLDFNRIEYIGEETF--SQLDNLHLLDLQHNLITHIHGRAF 318

  Fly   298 DGIIDITELDLSSTSLVGLPSAGLQNIEALYIQNTH----TLKTIPSIYNFRNLQRAYLTHSFHC 358
            ..:.::.::     .|||.|...|..  ..::.||.    :|..:|                .|.
  Fly   319 ANLTNMRDI-----RLVGNPIKELSG--ETFLHNTRLEALSLALMP----------------IHI 360

  Fly   359 CAFQFPSRHDPQRHAQRMLEIEKWRKQCKSDSGTRKERSTLDNPFNMPEDFGSFGGTDDSATDIT 423
                                                 .|:|..|.|:            |..::|
  Fly   361 -------------------------------------SSSLMEPLNI------------SFLNLT 376

  Fly   424 PITFASFDYMADDTMNKGTF--HEKIILNPGDDSSAELCGNFTFRKPNIE-CYPMPNDLNPCEDV 485
            .|.:...|:.|.::|...|:  :::..              :....|.:. |.|..:.::..:|:
  Fly   377 GIRYDHIDFEAINSMRNLTYIIYDRFF--------------YCSMTPRVRMCKPSTDGVSSFQDL 427

  Fly   486 MGYQWLRISVWIVVALAVVGNVAVLTVILSIRPESTPVPRFLMCHLAFADLCLGLYLLLVACIDA 550
            :....||.|.|::..|.:.|||.||......|.|:..| ..::.:||.||:.:|.||:.:...|.
  Fly   428 LSKPVLRYSAWVMATLTIAGNVLVLWGRFIYRDENVAV-TMVIRNLALADMLMGFYLVTIGVQDY 491

  Fly   551 HSMGEYFNFAYDWQYGLGCKVAGFLTVFASHLSVFTLTVITIERWLAITQAMYLNHRIKLRPAAL 615
            ....||:....||.....|.:.|.|.|.:|.:|:..|..:::||:|.|......:..|..|...|
  Fly   492 RYRNEYYKVVLDWITSWQCTLIGTLAVSSSEVSMLILAFMSLERFLLIADPFRGHRSIGNRVMWL 556

  Fly   616 IMLGGWIYSMLM----------SSLPLFGISNYSSTSICLPMENRDVYDTIYL---IAILGSNGV 667
            .::..||..:.:          |:||.:|  :||.|  |.|:...:.:...:|   ...||.|.:
  Fly   557 ALICIWITGVGLAVAPVLLWRTSTLPYYG--SYSGT--CFPLHIHEAFPMGWLYSAFVFLGVNLL 617

  Fly   668 AFSIIAVCYAQIYLSLGRETRQAHQNSPGELSVAKKMALLVFTNFACWSPIAFFGLTALAGYPLI 732
            ...:||:.|..:.:|:.| ||.|...:..:...|.:...:|.|:|.||.||....:.....|   
  Fly   618 LLVMIAMLYTALLISIWR-TRSATPLTLLDCEFAVRFFFIVLTDFLCWVPIIVMKIWVFFNY--- 678

  Fly   733 NVTKS--KILLVFFYPLNSCADPYLYAILTSQYRQDLFTLLSKLGLCQQSALKYKDSLSGQ--AT 793
            |::..  ..|:||..||||..:|.||...|.:||..:|.    .|..:.::.|..::.:|.  .|
  Fly   679 NISDDIYAWLVVFVLPLNSAVNPLLYTFTTPKYRNQIFL----RGWKKITSRKRAEAGNGNVATT 739

  Fly   794 TRFTIHGSIQRHSSLTCKMQTVM 816
            |..|..||.|.....|...:..|
  Fly   740 TTGTATGSSQHPDDFTIFAKAAM 762

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lgr1NP_524393.2 LRR <162..>354 CDD:443914 42/213 (20%)
leucine-rich repeat 182..207 CDD:275380 6/24 (25%)
leucine-rich repeat 208..231 CDD:275380 5/22 (23%)
leucine-rich repeat 233..256 CDD:275380 5/22 (23%)
leucine-rich repeat 257..277 CDD:275380 5/19 (26%)
leucine-rich repeat 278..302 CDD:275380 5/25 (20%)
leucine-rich repeat 303..323 CDD:275380 5/19 (26%)
leucine-rich repeat 324..346 CDD:275380 4/25 (16%)
7tmA_Glyco_hormone_R 490..767 CDD:320264 85/291 (29%)
TM helix 1 490..516 CDD:320264 10/25 (40%)
TM helix 2 524..549 CDD:320264 7/24 (29%)
TM helix 3 569..599 CDD:320264 10/29 (34%)
TM helix 4 611..633 CDD:320264 7/31 (23%)
TM helix 5 653..682 CDD:320264 7/31 (23%)
TM helix 6 692..725 CDD:320264 8/32 (25%)
TM helix 7 735..760 CDD:320264 10/26 (38%)
Lgr3NP_733115.1 LDLa 32..65 CDD:238060
LRR 85..389 CDD:443914 75/401 (19%)
leucine-rich repeat 181..204 CDD:275380 4/22 (18%)
leucine-rich repeat 205..228 CDD:275380 6/24 (25%)
leucine-rich repeat 229..252 CDD:275380 5/28 (18%)
leucine-rich repeat 253..275 CDD:275380 5/21 (24%)
leucine-rich repeat 276..299 CDD:275380 6/24 (25%)
leucine-rich repeat 300..323 CDD:275380 5/22 (23%)
leucine-rich repeat 324..347 CDD:275380 6/29 (21%)
7tmA_Relaxin_R 431..715 CDD:320265 85/292 (29%)
TM helix 1 432..458 CDD:320265 10/25 (40%)
TM helix 2 465..490 CDD:320265 8/25 (32%)
TM helix 3 510..540 CDD:320265 10/29 (34%)
TM helix 4 552..574 CDD:320265 4/21 (19%)
TM helix 5 603..632 CDD:320265 7/28 (25%)
TM helix 6 644..674 CDD:320265 8/29 (28%)
TM helix 7 683..708 CDD:320265 10/24 (42%)
Blue background indicates that the domain is not in the aligned region.

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