DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lgr1 and Rxfp1

DIOPT Version :9

Sequence 1:NP_524393.2 Gene:Lgr1 / 42133 FlyBaseID:FBgn0016650 Length:831 Species:Drosophila melanogaster
Sequence 2:NP_997617.1 Gene:Rxfp1 / 381489 MGIID:2682211 Length:758 Species:Mus musculus


Alignment Length:794 Identity:177/794 - (22%)
Similarity:306/794 - (38%) Gaps:230/794 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 GGALSANNCHDIHHGFDV---------YPNLTAVSLAQSTDTPLTATMPRSAWKCCCWNASNQAE 110
            |.....::|.| ::|:.:         |...:..|....|...|..::|   ..|.|       .
Mouse    54 GNRADEDHCGD-NNGWSLQLDKYFANYYKLASTNSFEAETSECLVGSVP---MHCLC-------R 107

  Fly   111 EVECRCEGDGLNRVP----QTLTLPIQRLTIASAGLP----RLRHTGLKVYGSTLLDVAFTDCLQ 167
            ::|..|:...|..||    ....:.:||..|.:  ||    |..|...|:            |||
Mouse   108 DLELDCDEANLRAVPSVSSNVTVMSLQRNFIRT--LPPNGFRKYHELQKL------------CLQ 158

  Fly   168 ---LELIQDGAFANLTLLRTIYITNAPKLTFLSKDVF--------LGISD--------------- 206
               :..:...||..|..|..:|::: .::|||...||        |.|.|               
Mouse   159 NNRIHSVSVSAFRGLRSLTKLYLSH-NRITFLKPGVFEDLHRLEWLIIEDNHLSRISPLTFYGLN 222

  Fly   207 TVDIIRIINSGLTRVPD---LGHLPPHNILQMIDLDNNQI------TRIDSKSIKVKTAQLILTN 262
            ::.::.::|:.|||:||   ..|:|.   |..:|.:.|:|      |.|...::.|    |::..
Mouse   223 SLILLVLMNNALTRLPDKPLCQHMPR---LHWLDFEGNRIHNLRNLTFISCNNLTV----LVMRK 280

  Fly   263 NEISYVDDSAFFG-SKIAKLSLKENKKLQMMHPNAFDGIIDITELDLSSTSLVGLPSAGLQNIEA 326
            |:|:|:::.||.. .|:.:|.|..| |::.:.||.|..:.::::|::|...        :|.|| 
Mouse   281 NKINYLNEHAFTHLQKLDELDLGSN-KIENLPPNIFKDLKELSQLNISYNP--------IQKIE- 335

  Fly   327 LYIQNTHTLKTIPSIYNFRNLQRAYLTHSFHCCAFQFPSRHDPQRHAQRMLEIEKWRKQCKSDSG 391
                                      .:.|.|.|                        :.||.|.
Mouse   336 --------------------------VNQFDCLA------------------------KLKSLSL 350

  Fly   392 TRKERSTLDNPFNMPEDFGSFGGTDDSATDITPITFASFDYMADDTMNKGTFHEKIILNPGDDSS 456
            ...|.|.:......|            ..:::.|.|..|.|                        
Mouse   351 EGIEISNIQQRMFRP------------LINLSHIYFKKFQY------------------------ 379

  Fly   457 AELCGNFTFRKPNI-ECYPMPNDLNPCEDVMGYQWLRISVWIVVALAVVGNVAVLTVILSIRPES 520
               ||    ..|:: .|.|..:.::..|:::.....|:.||:|.|:...||:.|:.:...||.|:
Mouse   380 ---CG----YAPHVRSCKPNTDGISSLENLLASIIQRVFVWVVSAITCFGNIFVICMRPYIRSEN 437

  Fly   521 TPVPRFLMCHLAFADLCLGLYLLLVACIDAHSMGEYFNFAYDWQYGLGCKVAGFLTVFASHLSVF 585
             .:....:..|..||..:|:||.::...|....|||...|..|...:.|:..|.|.:.::.:||.
Mouse   438 -KLHAMSIISLCCADCLMGVYLFVIGAFDLKFRGEYNKHAQPWMESVHCQFMGSLAILSTEVSVL 501

  Fly   586 TLTVITIERWLAITQAMYLNHRIKLRP------AALIMLGGWIYSMLMSSLPL----FGISNYSS 640
            .||.:|:|:::.|......     |||      ..||.:  ||...:::..||    |..:.|.:
Mouse   502 LLTFLTLEKYICIVYPFRC-----LRPRKCRTITVLIFI--WIIGFIVAFAPLGNKEFFKNYYGT 559

  Fly   641 TSICLPMENRDVYDT---IYLIAI-LGSNGVAFSIIAVCYAQIYLSLGRETRQAHQNS------- 694
            ..:|.|:.:.|...|   ||.:.| ||.|.|||.||...|..::.|:       ||:|       
Mouse   560 NGVCFPLHSEDTGSTGAQIYSVVIFLGINLVAFIIIVFSYGSMFYSV-------HQSSVTVTEIQ 617

  Fly   695 ---PGELSVAKKMALLVFTNFACWSPIAFFGLTALAGYPLINVTKSKILLVFFYPLNSCADPYLY 756
               ..|:.:||:...:|||:..||.||......:|....:.:...|.: ::|..|:||..:|.:|
Mouse   618 KQVKKEVVLAKRFFFIVFTDALCWIPIFILKFLSLLQVEIPDSITSWV-VIFILPINSALNPIIY 681

  Fly   757 AILTSQYRQDLFTL 770
            .:.|..:::.:..|
Mouse   682 TLTTRPFKEMIHQL 695

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lgr1NP_524393.2 leucine-rich repeat 182..207 CDD:275380 10/47 (21%)
leucine-rich repeat 208..231 CDD:275380 8/25 (32%)
leucine-rich repeat 233..256 CDD:275380 7/28 (25%)
leucine-rich repeat 257..277 CDD:275380 6/20 (30%)
LRR_8 258..313 CDD:290566 16/55 (29%)
leucine-rich repeat 278..302 CDD:275380 7/23 (30%)
leucine-rich repeat 303..323 CDD:275380 2/19 (11%)
leucine-rich repeat 324..346 CDD:275380 2/21 (10%)
7tm_1 505..756 CDD:278431 76/274 (28%)
Rxfp1NP_997617.1 LDLa 27..62 CDD:238060 1/7 (14%)
leucine-rich repeat 110..127 CDD:275378 5/16 (31%)
LRR 1 127..148 5/22 (23%)
leucine-rich repeat 128..151 CDD:275380 6/24 (25%)
LRR_RI 147..331 CDD:238064 50/212 (24%)
LRR_8 151..210 CDD:290566 17/71 (24%)
LRR 2 151..172 6/32 (19%)
leucine-rich repeat 152..175 CDD:275380 7/34 (21%)
LRR 3 175..196 7/21 (33%)
leucine-rich repeat 176..199 CDD:275380 7/23 (30%)
LRR_8 199..259 CDD:290566 14/62 (23%)
LRR 4 199..220 3/20 (15%)
leucine-rich repeat 200..223 CDD:275380 3/22 (14%)
LRR 5 223..244 6/20 (30%)
leucine-rich repeat 224..248 CDD:275380 7/23 (30%)
LRR 6 248..269 5/23 (22%)
leucine-rich repeat 249..272 CDD:275380 6/22 (27%)
LRR_8 272..331 CDD:290566 17/71 (24%)
LRR 7 272..293 7/24 (29%)
leucine-rich repeat 273..296 CDD:275380 7/26 (27%)
LRR 8 296..317 8/21 (38%)
leucine-rich repeat 297..320 CDD:275380 7/23 (30%)
LRR 9 320..341 6/55 (11%)
leucine-rich repeat 321..344 CDD:275380 8/81 (10%)
LRR 10 344..365 5/20 (25%)
leucine-rich repeat 345..366 CDD:275380 6/32 (19%)
7tm_1 422..681 CDD:278431 76/274 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2087
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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