DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lgr1 and Rxfp2

DIOPT Version :10

Sequence 1:NP_524393.2 Gene:Lgr1 / 42133 FlyBaseID:FBgn0016650 Length:831 Species:Drosophila melanogaster
Sequence 2:NP_001012493.1 Gene:Rxfp2 / 363866 RGDID:1309449 Length:737 Species:Rattus norvegicus


Alignment Length:833 Identity:188/833 - (22%)
Similarity:321/833 - (38%) Gaps:235/833 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 LLLHHLLLT-----SLSGRHFV------------YATSAVGGALSANNCHDIHHGFD-------- 71
            ||||.:||.     :|:|.:.|            ..|..:..|...:...|..:|.|        
  Rat     3 LLLHVVLLMEVKDFTLAGSNMVAPLCPKGYFPCGNLTKCLPRAFHCDGVDDCGNGADEDNCGDTS 67

  Fly    72 --------VYPNLTAVSLAQSTDTPLTATMPRSAWKCCCWNASNQAEEVECRCEGDGLNRVPQTL 128
                    |:.|:..|:|.:.      ..:.|....|.|       .|.|..|....|..||:..
  Rat    68 GWTTIFGTVHGNVNKVTLTEE------CFLSRYPQHCYC-------RENELECVNADLKAVPKVS 119

  Fly   129 TLPIQRLTIASAGLPRLRHTGLKVYGSTLLDVAFTDCLQLELIQDGAFANLTLLRTIYITNAPKL 193
            :    .:|:.|....::....:||                       |:....||.|::.: ..:
  Rat   120 S----NVTLLSLKKNKIHRLPVKV-----------------------FSKYAELRKIFLQH-NCI 156

  Fly   194 TFLSKDVFLGISDTVDIIRIINSGLTRV-----PDLGHLPPHNILQMIDLDNNQITRIDSKS--- 250
            |.:|:..|||:.: :.|:.:.::.:|.:     .||     |.:..:| ||:|.||||..:|   
  Rat   157 THISRRAFLGLHN-LQILYLSHNCITSLRPGIFKDL-----HQLAWLI-LDDNPITRISQRSFTG 214

  Fly   251 --------------------IKVKTAQL---ILTNNEISYVDDSAFFG-SKIAKLSLKENKKLQM 291
                                :..:..||   .|.||.|.::.:|.|.. ..:..|.|..| ::..
  Rat   215 LNSLFFLSMVSNRLEALPERLCAQMPQLNWVDLANNGIKFITNSTFLTCDSLTVLFLPRN-QIGF 278

  Fly   292 MHPNAFDGIIDITELDLSSTSLVGLPSAGLQNIEALYIQNTHTLKTIPSIYNFRNLQRAYLTHSF 356
            :....|..:.::.||||||..:..||:....::..|...|   |.:.|.:|..:|          
  Rat   279 VPEKTFSSLKNLGELDLSSNVIAKLPAHLFSDLHLLQKLN---LSSNPLLYVHKN---------- 330

  Fly   357 HCCAFQFPSRHDPQRHAQRMLEIEKWRKQCKSDSGTRKERSTLD-NPFNMPE-DFGSFGGTDDSA 419
                 ||                           |:.|:..:|| ....:|. :.|.|       
  Rat   331 -----QF---------------------------GSLKQLQSLDLERIEIPNINTGMF------- 356

  Fly   420 TDITPITFASFDYMADDTMNKGTFHEKIILNPGDDSSAELCGNFTFR----KPNIE-CYPMPNDL 479
               .|:...|..|:.                             |||    .|::. |.|..:.:
  Rat   357 ---RPMKNLSHIYLK-----------------------------TFRYCSYVPHVRICMPSTDGI 389

  Fly   480 NPCEDVMGYQWLRISVWIVVALAVVGNVAVLTVILSIRPESTPVP---RFLMCHLAFADLCLGLY 541
            :..||::....||:|||::..:...||..|:.|...|:.|:|...   :.|.|    ||..:|:|
  Rat   390 SSSEDLLANSILRVSVWVIAFITCAGNFLVIAVRSLIKAENTTHAMSIKILCC----ADCLMGVY 450

  Fly   542 LLLVACIDAHSMGEYFNFAYDWQYGLGCKVAGFLTVFASHLSVFTLTVITIERWLAITQAMYLNH 606
            |..|...|....|:|..:|..|...:.|::.|||...::.:||..||.:|:|::|.|. ..:.|.
  Rat   451 LFSVGVFDIKYRGQYQKYALLWMESVPCRLLGFLATLSTEVSVLLLTFLTLEKFLVIV-FPFSNL 514

  Fly   607 RIKLRPAALIMLGGWIYSMLMSSLPL-----FGISNYSSTSICLPMENRDVYDTI-------YLI 659
            |:..|..|:::...|:...|::::|.     || :.|....:|.|:.    ||..       |.:
  Rat   515 RLGKRQTAVVLASIWVAGFLIAAVPFTSEDYFG-NFYGKNGVCFPLH----YDQAEDFGSRGYSL 574

  Fly   660 AI-LGSNGVAFSIIAVCYAQIYLSLGR---ETRQAHQNSPGELSVAKKMALLVFTNFACWSPIAF 720
            .| ||.|.:||.:|...|..::.|:.:   :|.:...:...|::||.:...:||::..||.|:..
  Rat   575 GIFLGVNLLAFLVITFSYVTMFCSIQKTALQTAEVRSHIGKEVAVANRFFFIVFSDAICWIPVFV 639

  Fly   721 FGLTALAGYPLINVTKSKILLVFFYPLNSCADPYLYAILTSQYRQDLFTLLSK 773
            ..:.:|....:.....|.| :|||.|:||..:|.||.:.||.::..|..||.|
  Rat   640 VKILSLLQVEIPGTITSWI-VVFFLPVNSALNPILYTLTTSLFKDKLKQLLHK 691

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lgr1NP_524393.2 LRR <162..>354 CDD:443914 49/223 (22%)
leucine-rich repeat 182..207 CDD:275380 8/24 (33%)
leucine-rich repeat 208..231 CDD:275380 4/27 (15%)
leucine-rich repeat 233..256 CDD:275380 9/45 (20%)
leucine-rich repeat 257..277 CDD:275380 8/23 (35%)
leucine-rich repeat 278..302 CDD:275380 4/23 (17%)
leucine-rich repeat 303..323 CDD:275380 8/19 (42%)
leucine-rich repeat 324..346 CDD:275380 5/21 (24%)
7tmA_Glyco_hormone_R 490..767 CDD:320264 84/295 (28%)
TM helix 1 490..516 CDD:320264 9/25 (36%)
TM helix 2 524..549 CDD:320264 8/27 (30%)
TM helix 3 569..599 CDD:320264 11/29 (38%)
TM helix 4 611..633 CDD:320264 5/26 (19%)
TM helix 5 653..682 CDD:320264 11/36 (31%)
TM helix 6 692..725 CDD:320264 8/32 (25%)
TM helix 7 735..760 CDD:320264 11/24 (46%)
Rxfp2NP_001012493.1 LDLa 28..63 CDD:238060 5/34 (15%)
leucine-rich repeat 96..121 CDD:275380 8/35 (23%)
LRR <120..>353 CDD:443914 60/313 (19%)
leucine-rich repeat 122..145 CDD:275380 5/45 (11%)
leucine-rich repeat 146..169 CDD:275380 8/23 (35%)
leucine-rich repeat 170..193 CDD:275380 4/27 (15%)
leucine-rich repeat 194..217 CDD:275380 9/23 (39%)
leucine-rich repeat 218..241 CDD:275380 0/22 (0%)
leucine-rich repeat 242..265 CDD:275380 7/22 (32%)
leucine-rich repeat 266..289 CDD:275380 4/23 (17%)
leucine-rich repeat 290..313 CDD:275380 8/22 (36%)
leucine-rich repeat 314..337 CDD:275380 9/67 (13%)
leucine-rich repeat 338..357 CDD:275380 5/28 (18%)
7tm_GPCRs 400..685 CDD:475119 84/295 (28%)
TM helix 1 401..425 CDD:320632 9/23 (39%)
TM helix 2 434..455 CDD:320632 7/24 (29%)
TM helix 3 479..501 CDD:320632 7/21 (33%)
TM helix 4 523..539 CDD:320632 2/15 (13%)
TM helix 5 571..594 CDD:320632 9/22 (41%)
TM helix 6 620..642 CDD:320632 6/21 (29%)
TM helix 7 653..678 CDD:320632 11/25 (44%)

Return to query results.
Submit another query.