DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lgr1 and Lgr6

DIOPT Version :9

Sequence 1:NP_524393.2 Gene:Lgr1 / 42133 FlyBaseID:FBgn0016650 Length:831 Species:Drosophila melanogaster
Sequence 2:NP_001028581.1 Gene:Lgr6 / 329252 MGIID:2441805 Length:967 Species:Mus musculus


Alignment Length:833 Identity:190/833 - (22%)
Similarity:334/833 - (40%) Gaps:177/833 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 LLHHLLLTS---LSGRHFVYAT-SAVGG-------ALSANNCHDI-HHGFDVYPNLTAVSLAQST 85
            |.|||....   |||.|..:.. .|..|       .|.:|....| .......|:|.::.|    
Mouse    85 LFHHLRFLEELRLSGNHLSHIPGQAFSGLHSLKILMLQSNQLRGIPAEALWELPSLQSLRL---- 145

  Fly    86 DTPLTATMPRSAWKCC-----CWNASNQAEEVECRCEGDGLNRVP--QTLTLPI----------- 132
            |..|.:.:|..:::..     .|...|...|:..|    .||.:|  |.:||.:           
Mouse   146 DANLISLVPERSFEGLSSLRHLWLDDNALTEIPVR----ALNNLPALQAMTLALNHIRHIPDYAF 206

  Fly   133 QRLT---IASAGLPRLRHTGLK----VYGSTLLDVAFTDCLQLEL-------------------- 170
            |.||   :......|::|.|..    ::....||:.:.:..:..|                    
Mouse   207 QNLTSLVVLHLHNNRIQHVGTHSFEGLHNLETLDLNYNELQEFPLAIRTLGRLQELGFHNNNIKA 271

  Fly   171 IQDGAFANLTLLRTIYITNAPKLTFLSKDVFL-----------GISD-----------TVDIIRI 213
            |.:.||....||:||:..:.| :.|:.:..|.           |.:|           :::|:.:
Mouse   272 IPEKAFMGSPLLQTIHFYDNP-IQFVGRSAFQYLSKLHTLSLNGATDIQEFPDLKGTTSLEILTL 335

  Fly   214 INSGLTRVPD--LGHLPPHNILQMIDLDNNQITRIDSKSIKVKTAQLILTNNEISYVDDSAF--F 274
            ..:|:..:|.  ...||.   |::::|.:|||..:.|.....|..::.|.:|.|..:....|  .
Mouse   336 TRAGIRLLPPGVCQQLPR---LRILELSHNQIEELPSLHRCQKLEEIGLRHNRIKEIGADTFSQL 397

  Fly   275 GSKIAKLSLKENKKLQMMHPNAFDGIIDITELDLSSTSLVGLPSAGLQNIEALYIQNTHTLKTIP 339
            || :..|.|..| .::.:||.||..:..:.:|||:...|..||.|||..:..|.::....|....
Mouse   398 GS-LQALDLSWN-AIRAIHPEAFSTLRSLVKLDLTDNQLTTLPLAGLGGLMHLKLKGNLALSQAF 460

  Fly   340 SIYNFRNLQRAYLTHSFHCCAFQFPSRHDPQRHAQRMLEIEKWRKQCKSDSGTRKERSTLDNPFN 404
            |..:|..|:...:.:::.|||:..                      |.|...|..:....|  |:
Mouse   461 SKDSFPKLRILEVPYAYQCCAYGI----------------------CASFFKTSGQWQAED--FH 501

  Fly   405 MPED------FGSFGGTDDSATDITPITFASFDYMADDTMNKGTFHEKIILNPGDDSSAELCGNF 463
            ..|:      .|...|..::..|:..           |.:..||          :||...     
Mouse   502 PEEEEAPKRPLGLLAGQAENHYDLDL-----------DELQMGT----------EDSKPH----- 540

  Fly   464 TFRKPNIECYPMPNDLNPCEDVMGYQWLRISVWIVVALAVVGNVAVLTVILSIRPESTPVPRFLM 528
                |:::|.|:|....|||.:.....:|::||.:|.|:|:.|..||..:.:..|......:.::
Mouse   541 ----PSVQCSPVPGPFKPCEHLFESWGIRLAVWAIVLLSVLCNGLVLLTVFASGPSPLSPVKLVV 601

  Fly   529 CHLAFADLCLGLYLLLVACIDAHSMGEYFNFAYDWQYGLGCKVAGFLTVFASHLSVFTLTVITIE 593
            ..:|.|:...|:...|:|.:||.:.|::..:...|:.||||:..|||.|..|..||..||:..::
Mouse   602 GAMAGANALSGISCGLLASVDALTYGQFAEYGARWESGLGCQATGFLAVLGSEASVLLLTLAAVQ 666

  Fly   594 RWLAITQAMYLNHRI---KLRPAAL--IMLGGWIYSMLMSSLPLFGISNYSSTSICLPM---ENR 650
            ..:::|.........   .:|..||  :.|.|     |.::|||..:..|.::.:|||.   |.|
Mouse   667 CSISVTCVRAYGKAPSPGSVRAGALGCLALAG-----LAAALPLASVGEYGASPLCLPYAPPEGR 726

  Fly   651 DVYDTIYLIAILGSNGVAFSIIAVCYAQIYLSLGRETRQAHQNSPGELSVAKKMALLVFTNFACW 715
            .. ...:.:|::..|.:.|.::|..|.::|..|.|...:|    ..:.::.:.:|.|:|.:...:
Mouse   727 PA-ALGFAVALVMMNSLCFLVVAGAYIKLYCDLPRGDFEA----VWDCAMVRHVAWLIFADGLLY 786

  Fly   716 SPIAFFGLTALAG-YPLINVTKSKILLVFFYPLNSCADPYLYAILTSQYRQDL 767
            .|:||....::.| :|:.......:|||.. ||.:|.:|.||.:....:|.||
Mouse   787 CPVAFLSFASMLGLFPVTPEAVKSVLLVVL-PLPACLNPLLYLLFNPHFRDDL 838

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lgr1NP_524393.2 leucine-rich repeat 182..207 CDD:275380 8/46 (17%)
leucine-rich repeat 208..231 CDD:275380 5/24 (21%)
leucine-rich repeat 233..256 CDD:275380 7/22 (32%)
leucine-rich repeat 257..277 CDD:275380 5/21 (24%)
LRR_8 258..313 CDD:290566 16/56 (29%)
leucine-rich repeat 278..302 CDD:275380 7/23 (30%)
leucine-rich repeat 303..323 CDD:275380 9/19 (47%)
leucine-rich repeat 324..346 CDD:275380 4/21 (19%)
7tm_1 505..756 CDD:278431 66/259 (25%)
Lgr6NP_001028581.1 LRRNT 34..68 CDD:214470
LRR_4 70..107 CDD:289563 8/21 (38%)
leucine-rich repeat 70..91 CDD:275380 4/5 (80%)
LRR 1 91..112 5/20 (25%)
LRR_8 92..150 CDD:290566 13/61 (21%)
LRR_4 92..131 CDD:289563 9/38 (24%)
leucine-rich repeat 92..115 CDD:275380 6/22 (27%)
LRR 2 115..136 3/20 (15%)
leucine-rich repeat 116..139 CDD:275380 3/22 (14%)
LRR_8 138..198 CDD:290566 16/67 (24%)
LRR 3 139..160 5/24 (21%)
leucine-rich repeat 140..163 CDD:275380 5/26 (19%)
LRR_RI 143..392 CDD:238064 50/260 (19%)
LRR 4 163..186 6/26 (23%)
leucine-rich repeat 164..187 CDD:275380 6/26 (23%)
LRR_8 186..246 CDD:290566 12/59 (20%)
LRR 5 187..208 3/20 (15%)
leucine-rich repeat 188..211 CDD:275380 5/22 (23%)
LRR 6 211..232 3/20 (15%)
leucine-rich repeat 212..235 CDD:275380 3/22 (14%)
LRR 7 235..256 3/20 (15%)
leucine-rich repeat 236..258 CDD:275380 3/21 (14%)
LRR_8 258..314 CDD:290566 10/56 (18%)
LRR 8 258..279 3/20 (15%)
leucine-rich repeat 259..282 CDD:275380 3/22 (14%)
LRR 9 282..302 6/20 (30%)
leucine-rich repeat 283..304 CDD:275380 6/21 (29%)
LRR 10 303..325 2/21 (10%)
LRR_8 305..364 CDD:290566 10/61 (16%)
leucine-rich repeat 307..348 CDD:275380 5/40 (13%)
LRR 11 329..350 3/20 (15%)
LRR 12 353..374 6/23 (26%)
leucine-rich repeat 354..375 CDD:275380 6/20 (30%)
LRR_8 375..434 CDD:290566 17/60 (28%)
LRR 13 375..396 5/20 (25%)
leucine-rich repeat 376..399 CDD:275380 4/22 (18%)
LRR 14 399..420 8/22 (36%)
leucine-rich repeat 400..421 CDD:275380 7/21 (33%)
LRR 15 423..443 8/19 (42%)
leucine-rich repeat 424..444 CDD:275380 9/19 (47%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2087
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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