DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lgr1 and fshr-1

DIOPT Version :10

Sequence 1:NP_524393.2 Gene:Lgr1 / 42133 FlyBaseID:FBgn0016650 Length:831 Species:Drosophila melanogaster
Sequence 2:NP_001263853.1 Gene:fshr-1 / 179381 WormBaseID:WBGene00008239 Length:932 Species:Caenorhabditis elegans


Alignment Length:715 Identity:224/715 - (31%)
Similarity:364/715 - (50%) Gaps:74/715 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 AVSLAQSTDTPLTATMPRSAWKCCCWNASNQAEEVECRCEGDGLNRVPQTLTLPIQRLTIASAGL 142
            |:|||| |.....|........|.| ..:.:..:.||.|.|..::::|..||        |..|.
 Worm    33 ALSLAQ-TKHSCMALKAEDGEGCTC-KQTKRYGQPECCCMGLIVSQLPTNLT--------ADVGY 87

  Fly   143 PRLRHTGLKVYGSTLLD-------VAFTDCLQLELIQDGAFANLTLLRTIYITNAPKLTFLSKDV 200
            ..|.:|.:.|......|       :...:...||.|...:.:.|:.||.:.:...|.|..:|..:
 Worm    88 LYLHNTSISVITPNFFDKFPSIRELEIDNSAHLEHIDGSSLSVLSKLRKLSVVKCPNLREISGKL 152

  Fly   201 FLGISDTVDIIRIINSGLTRVPDLGHLPPHNI-LQMIDLDNNQITRI-DSKSIKVKTAQLILTNN 263
            .:..:...::| :.|:||..:|.|.....|:: |..|||..|:|..| |||...||...::|:.|
 Worm   153 LVNNTRIQNVI-LKNNGLATMPSLRMTDAHHVLLDRIDLSGNKIKFISDSKVRNVKARTVVLSEN 216

  Fly   264 EISYVDDSAFFGSKIAKLSLKENKKLQMMHPNAFDGIIDITELDLSSTSLVGLPSAGLQNIEALY 328
            ::..:...||..|:..||.|..|..|:.:..:||..:..:..||||.||:..||..||:.::.|.
 Worm   217 KLIEISGYAFTESQFLKLKLNNNPDLRSLSVDAFKNMAGLQTLDLSHTSIDTLPINGLKKLKTLI 281

  Fly   329 IQNTHTLKTIPSIYNFRNLQRAYLTHSFHCCAFQF---PSRHDPQRHAQRMLEIEK----WRKQC 386
            :.:..|||::||:.:|.:|:.|:.|:..|||.|::   .:.:|..::.:...||.|    .|:|.
 Worm   282 LNDVPTLKSLPSVLSFTDLETAHFTYPHHCCLFKYVDDVTMNDNGKYQRNAKEIHKRICDKREQQ 346

  Fly   387 KSDSGTRKERST-----LDNPFNMPEDFGSFGGTDDSATDITPITFASFDYMADDTMNKGTFHEK 446
            |  ...|::|.|     ||.......|..::.|.||:..|..|                      
 Worm   347 K--VARRRKRETSGIDFLDMLLKEWTDNSTYTGPDDADDDELP---------------------- 387

  Fly   447 IILNPGDDSSAELCGNF--TFRK--PNIECYPMPNDLNPCEDVMGYQWLRISVWIVVALAVVGNV 507
                |..:..||.|.:.  ..:|  .||.|||.|:.|||||:::||.:|||:||:|...|:|||:
 Worm   388 ----PFVEIGAEPCQSIGEEVQKYYSNITCYPQPDALNPCENIVGYPFLRIAVWVVCLAAIVGNI 448

  Fly   508 AVLTVILSIRPESTPVPRFLMCHLAFADLCLGLYLLLVACIDAHSMGEYFNFAYDWQYGLGCKVA 572
            .|..::..:..:...:....|.:::.||:..|:||.::|..||....||:..|..||.|.||:.|
 Worm   449 IVWALLGIVYEKRMRMHYLYMINMSVADMVTGIYLAVLAIADAKMSDEYYRHAVWWQTGWGCRAA 513

  Fly   573 GFLTVFASHLSVFTLTVITIERWLAITQAMYLNHRIKLRPAALIMLGGWIYSMLMSSLPLFGISN 637
            |||.||||.|.:.::.:|..|.... |:..:...|:..:...|:|:|||:::::|:.||.|.:|:
 Worm   514 GFLAVFASELGIISMFLIAFEMSYN-TRQSFRGRRLSPKVGVLLMIGGWLFAIIMAILPWFDVSS 577

  Fly   638 YSSTSICLPMENRDVYDTIYLIAILGSNGVAFSIIAVCYAQIYLSL-GRETRQAHQNSPGELSVA 701
            ||.:|:|||:....::|..|||..|..|.:||:.:|:.|..|...| ..|||:.      :.::.
 Worm   578 YSESSVCLPLRAATIFDKSYLIFGLSFNFLAFAAMALSYGFIVKMLKENETREE------DRALI 636

  Fly   702 KKMALLVFTNFACWSPIAFFGLTALAGYPLINVTKSKILLVFFYPLNSCADPYLYAILTS--QYR 764
            .||.:||.|:..||.|..|||.||..|:||::::.:|.:||||:|:|:.|:|:||...|.  |:|
 Worm   637 TKMTVLVVTDLICWFPTLFFGFTATIGFPLLSLSSAKFVLVFFFPINAFANPFLYVFFTEVIQHR 701

  Fly   765  764
             Worm   702  701

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lgr1NP_524393.2 LRR <162..>354 CDD:443914 59/193 (31%)
leucine-rich repeat 182..207 CDD:275380 5/24 (21%)
leucine-rich repeat 208..231 CDD:275380 6/22 (27%)
leucine-rich repeat 233..256 CDD:275380 12/23 (52%)
leucine-rich repeat 257..277 CDD:275380 4/19 (21%)
leucine-rich repeat 278..302 CDD:275380 7/23 (30%)
leucine-rich repeat 303..323 CDD:275380 10/19 (53%)
leucine-rich repeat 324..346 CDD:275380 7/21 (33%)
7tmA_Glyco_hormone_R 490..767 CDD:320264 102/278 (37%)
TM helix 1 490..516 CDD:320264 11/25 (44%)
TM helix 2 524..549 CDD:320264 7/24 (29%)
TM helix 3 569..599 CDD:320264 12/29 (41%)
TM helix 4 611..633 CDD:320264 8/21 (38%)
TM helix 5 653..682 CDD:320264 11/28 (39%)
TM helix 6 692..725 CDD:320264 11/32 (34%)
TM helix 7 735..760 CDD:320264 11/24 (46%)
fshr-1NP_001263853.1 LRR 72..>302 CDD:443914 67/238 (28%)
leucine-rich repeat 87..108 CDD:275380 4/20 (20%)
leucine-rich repeat 109..133 CDD:275380 4/23 (17%)
leucine-rich repeat 134..158 CDD:275380 5/23 (22%)
leucine-rich repeat 159..174 CDD:275380 4/15 (27%)
leucine-rich repeat 185..208 CDD:275380 11/22 (50%)
leucine-rich repeat 209..231 CDD:275380 5/21 (24%)
leucine-rich repeat 232..255 CDD:275380 7/22 (32%)
leucine-rich repeat 256..276 CDD:275380 10/19 (53%)
7tmA_Glyco_hormone_R 430..702 CDD:320264 102/279 (37%)
TM helix 1 431..457 CDD:320264 11/25 (44%)
TM helix 2 465..490 CDD:320264 7/24 (29%)
TM helix 3 510..540 CDD:320264 12/30 (40%)
TM helix 4 551..573 CDD:320264 8/21 (38%)
TM helix 5 593..622 CDD:320264 11/28 (39%)
TM helix 6 630..660 CDD:320264 11/35 (31%)
TM helix 7 670..695 CDD:320264 11/24 (46%)

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