DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lgr1 and rxfp1

DIOPT Version :9

Sequence 1:NP_524393.2 Gene:Lgr1 / 42133 FlyBaseID:FBgn0016650 Length:831 Species:Drosophila melanogaster
Sequence 2:NP_001177863.1 Gene:rxfp1 / 100498669 ZFINID:ZDB-GENE-110125-1 Length:748 Species:Danio rerio


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lgr1NP_524393.2 leucine-rich repeat 182..207 CDD:275380
leucine-rich repeat 208..231 CDD:275380
leucine-rich repeat 233..256 CDD:275380
leucine-rich repeat 257..277 CDD:275380
LRR_8 258..313 CDD:290566
leucine-rich repeat 278..302 CDD:275380
leucine-rich repeat 303..323 CDD:275380
leucine-rich repeat 324..346 CDD:275380
7tm_1 505..756 CDD:278431
rxfp1NP_001177863.1 LDLa 29..64 CDD:238060
LRR_RI 99..304 CDD:238064
leucine-rich repeat 125..148 CDD:275380
LRR_8 148..207 CDD:290566
leucine-rich repeat 149..172 CDD:275380
leucine-rich repeat 173..196 CDD:275380
LRR_8 196..278 CDD:290566
leucine-rich repeat 197..220 CDD:275380
leucine-rich repeat 221..243 CDD:275380
leucine-rich repeat 244..267 CDD:275380
LRR_8 268..326 CDD:290566
leucine-rich repeat 268..291 CDD:275380
leucine-rich repeat 292..315 CDD:275380
leucine-rich repeat 316..339 CDD:275380
leucine-rich repeat 340..361 CDD:275380
7tm_1 417..676 CDD:278431
7tm_4 <482..>616 CDD:304433
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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