Protein Alignment Atg8b and Gabarap

DIOPT Version :9

• Sequence 1: NP_001303480.1
• Gene: Atg8b / 42132
• FlyBaseID: FBgn0038539
• Length: 120
• Species: Drosophila melanogaster
• Sequence 2: NP_742033.1
• Gene: Gabarap / 58974
• RGDID: 61911
• Length: 117
• Species: Rattus norvegicus
• Alignment Length: 116
• Identity: 90/116 - (77%)
• Similarity: 107/116 - (92%)
• Gaps: 0/116 - (0%)

  Fly     3 MNYQYKKDHSFDKRRNEGDKIRRKYPDRVPVIVEKAPKTRYAELDKKKYLVPADLTVGQFYFLIR 67
            |.:.||::|.|:|||:||:|||:|||||||||||||||.|..:|||||||||:||||||||||||
  Rat     1 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIR 65

  Fly    68 KRINLRPDDALFFFVNNVIPPTSATMGALYQEHFDKDYFLYISYTDENVYG 118
            |||:||.:|||||||||||||||||||.|||||.::|:||||:|:||:|||
  Rat    66 KRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Atg8b	NP_001303480.1	GABARAP	7..118	CDD:176355	87/110 (79%)
Gabarap	NP_742033.1	Interaction with beta-tubulin	1..22		11/20 (55%)
		Ubl_ATG8_GABARAP	2..116	CDD:340752	87/113 (77%)
		Interaction with GPHN. /evidence=ECO:0000269|PubMed:10900017	36..117		65/81 (80%)
		Interaction with GABRG2. /evidence=ECO:0000250|UniProtKB:O95166	36..68		26/31 (84%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C166343688
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG1654
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	1	1.010	-	-		QHG54038
OrthoDB	1	1.010	-	-		D1508198at2759
OrthoFinder	1	1.000	-	-		FOG0000590
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	1	0.900	-	-		OOG6_100707
Panther	1	1.100	-	-	O	PTHR10969
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X355
SwiftOrtho	1	1.000	-	-
TreeFam	1	0.960	-	-
	11	10.720