DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pxt and Pxdn

DIOPT Version :9

Sequence 1:NP_650648.3 Gene:Pxt / 42131 FlyBaseID:FBgn0261987 Length:809 Species:Drosophila melanogaster
Sequence 2:XP_006515268.1 Gene:Pxdn / 69675 MGIID:1916925 Length:1503 Species:Mus musculus


Alignment Length:874 Identity:261/874 - (29%)
Similarity:388/874 - (44%) Gaps:192/874 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 PLATSTESSKKPEKATSGLLKKCLPCSDGIRCVPQIQCPAHVRMESHEKPQICDLPA---GKFG- 102
            |:..|..|....|..|:    ..||||                  |..:|:    ||   .|.| 
Mouse   550 PVFASIPSDMTVEVGTN----VQLPCS------------------SQGEPE----PAITWNKDGV 588

  Fly   103 YCCETGQNHTAPKPETSPKERRSGFPTILSPAVLDEAR-----RNFEHLMHGVAQIPV------- 155
            ...|:|:.|.:|:          ||.||......|..|     ||    ..|.|.:.:       
Mouse   589 QVTESGKFHISPE----------GFLTINDVGTADAGRYECVARN----TIGYASVSMVLSVNVP 639

  Fly   156 ---RRGFPDFAHGLV-----------------FHSTAKDD-----LHNFAISNSAIEQVMTTQLF 195
               |.|.|..|..:|                 |.|..:..     |..:......:.|....::|
Mouse   640 DVSRNGDPYVATSIVEAIATVDRAINSTRTHLFDSRPRSPNDLLALFRYPRDPYTVGQARAGEIF 704

  Fly   196 GKKEQVPVEDFITNNVPIKFTETPLAHHCQPPPV----------CGNIRSV-----------YRS 239
            .:..|: :::.:.:.:.:....|...::....|.          |...|.|           ||:
Mouse   705 ERTLQL-IQEHVQHGLMVDLNGTSYHYNDLVSPQYLSLIANLSGCTAHRRVNNCSDMCFHQKYRT 768

  Fly   240 MDGTCNNPEPQRSLWGAAGQPMERMLPPAYEDGIWTPRAHSS----DGTPLLGARKISRTLL-SD 299
            .||||||  .|..:|||:....||:|...||:|..|||..:|    :|..|...|.:|.||: ::
Mouse   769 HDGTCNN--LQHPMWGASLTAFERLLKAVYENGFNTPRGINSQRQYNGHVLPMPRLVSTTLIGTE 831

  Fly   300 VDRPHPKYNLMVMQFGQVLAHDISQT----SSIRLEDGSLVQCCSPEGKVALSPQQSHFACMPIH 360
            |..|..::..|:||:||.|.||:..|    |..|..||   |.||       |...:...|..:.
Mouse   832 VITPDEQFTHMLMQWGQFLDHDLDSTVVALSQARFSDG---QHCS-------SVCSNDPPCFSVM 886

  Fly   361 VEPDDEFFSAFGVRCLNFVRLSLVPSPDC----------QLSYGKQLTKVTHFVDASPVYGSSDE 415
            :.|:|....: |.||:.|||    .||.|          .:...:|:.::|.::|||.||||:|.
Mouse   887 IPPNDPRVRS-GARCMFFVR----SSPVCGSGMTSLLMNSVYPREQINQLTSYIDASNVYGSTDH 946

  Fly   416 ASRSLR--AFRGGRLR--MMNDFGRDLLPL-TNDKKAC--PSEEAGKSCFHSGDGRTNQIISLIT 473
            .:||:|  |...|.||  ::...|:.|||. |.....|  ...|:...||.:||.|.|:.:.|.:
Mouse   947 EARSIRDLASHRGLLRQGIVQRSGKPLLPFATGPPTECMRDENESPIPCFLAGDHRANEQLGLTS 1011

  Fly   474 LQILLAREHNRVAGALHELNPSASDETLFQEARRIVIAEMQHITYNEFLPIIIGPQQMKRFRLVP 538
            :..|..|||||:|..|.:|||....:|::.|.|:||.||:|||||..:||.|:|...||..    
Mouse  1012 MHTLWFREHNRIAAELLKLNPHWDGDTVYHETRKIVGAEIQHITYRHWLPKILGEVGMKML---- 1072

  Fly   539 LHQGYSHDYNVNVNPAITNEFSGAAYRMGHSSV-------DGKFQ-IRQEHGRIDEVVNIPDVMF 595
               |....|:.:||..|.|.|:.||:|.||:.:       |..|: |.|.|      |.:....|
Mouse  1073 ---GEYRGYDPSVNAGIFNAFATAAFRFGHTLINPLLYRLDENFEPIPQGH------VPLHKAFF 1128

  Fly   596 NPSRMRKREFYDDMLRTLYSQ------PMQQVDSSISQGLSRFLFRGDNPFGLDLAAINIQRGRD 654
            :|.|:......|.:||.|:..      |.|.:::.:::.    ||...:...|||||||||||||
Mouse  1129 SPFRIVNEGGIDPLLRGLFGVAGKMRIPSQLLNTELTER----LFSMAHTVALDLAAINIQRGRD 1189

  Fly   655 QGLRSYNDYLELMGAPKLHSFEQFPIE-----IAQKLSRVYRTPDDIDLWVGGLLEKAVEGGVVG 714
            .|:..|:||.........::||....|     |.:||.|:|.:..:|||:...::|..|.|..:|
Mouse  1190 HGIPPYHDYRVYCNLSAAYTFEDLKNEIKSPVIREKLQRLYGSTLNIDLFPALMVEDLVPGSRLG 1254

  Fly   715 VTFAEIIADQFARFKQGDRYYYEYDNGINPGAFNPLQLQEIRKVTLARLLCDNSDRLTLQAVPLA 779
            .|...:::.||.|.:.|||.:||     |||.|:|.||.::::.:|||:||||||.:|  .|...
Mouse  1255 PTLMCLLSTQFRRLRDGDRLWYE-----NPGVFSPAQLTQLKQTSLARILCDNSDNIT--RVQQD 1312

  Fly   780 AFVRADHPGNQMIGCDDPNLPSVNLEAWR 808
            .|..|:.| :....|:|  :|.|:|..|:
Mouse  1313 VFRVAEFP-HGYSSCED--IPRVDLRVWQ 1338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PxtNP_650648.3 GH64-TLP-SF <67..119 CDD:295337 12/55 (22%)
An_peroxidase 237..772 CDD:281139 205/579 (35%)
peroxinectin_like 396..767 CDD:188655 142/396 (36%)
PxdnXP_006515268.1 leucine-rich repeat 94..112 CDD:275380
leucine-rich repeat 113..127 CDD:275378
LRR_8 115..171 CDD:338972
LRR_8 160..219 CDD:338972
leucine-rich repeat 161..184 CDD:275378
leucine-rich repeat 185..208 CDD:275378
leucine-rich repeat 209..221 CDD:275378
TPKR_C2 217..268 CDD:387596
I-set 271..358 CDD:369462
I-set 367..454 CDD:369462
Ig3_Peroxidasin 471..544 CDD:143222
Ig4_Peroxidasin 567..635 CDD:143223 24/103 (23%)
peroxidasin_like 889..1328 CDD:188658 163/468 (35%)
VWC 1439..1494 CDD:214564
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2408
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S3260
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D276568at2759
OrthoFinder 1 1.000 - - FOG0000202
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.770

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