DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pxt and pxdn

DIOPT Version :9

Sequence 1:NP_650648.3 Gene:Pxt / 42131 FlyBaseID:FBgn0261987 Length:809 Species:Drosophila melanogaster
Sequence 2:NP_001076815.1 Gene:pxdn / 493201 XenbaseID:XB-GENE-923300 Length:1460 Species:Xenopus tropicalis


Alignment Length:803 Identity:237/803 - (29%)
Similarity:359/803 - (44%) Gaps:157/803 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   106 ETGQNHTAPKPETSPKERRSGFPTILSPAVLDEARRNFEHLMHGVAQIPV--------------- 155
            |:|:.|.:|          .|:..|....:.|:.|      ...||:.|:               
 Frog   560 ESGKFHISP----------HGYLAIRDAGLADQGR------YECVARNPIGYSSVSMVLSVLVPE 608

  Fly   156 --RRGFPDFAHGLV-----------------FHSTAKDD-----LHNFAISNSAIEQVMTTQLFG 196
              |.|.|..|..::                 |.|..:..     |..:......:||....::|.
 Frog   609 VSRTGDPFVATSIIEAIATVDRAINSTRTHLFDSRPRSPGDLLALFRYPRDPYTVEQARAAEIFE 673

  Fly   197 KKEQVPVEDFITNNVPIKFTETPLAHHCQPPPV-------------------CGNI--RSVYRSM 240
            :..|: ::|.:.:.:.:....|...::....|.                   |.|:  ...||:.
 Frog   674 RTLQL-IQDHVQSGLMVDLNGTSYHYNDLVSPQYLNMIANLSGCATHRRINNCSNMCFHQKYRTH 737

  Fly   241 DGTCNNPEPQRSLWGAAGQPMERMLPPAYEDGIWTPRAHSS---DGTPLLGARKISRTLL-SDVD 301
            ||||||  .|..:|||:....||:|...||:|...||..|.   :|.||...|.:|.||: :...
 Frog   738 DGTCNN--LQHPMWGASLTAFERLLKSVYENGFNLPRGISGRIYNGFPLPLPRLVSTTLIGTHTI 800

  Fly   302 RPHPKYNLMVMQFGQVLAHDISQT----SSIRLEDGSLVQCCSPEGKVALSPQQSHFACMPIHVE 362
            .|..::..|:||:||.|.||:..|    |..|..||   |.||    |..:   :...|.||.|.
 Frog   801 TPDEQFTHMLMQWGQFLDHDLDSTVVALSQARFSDG---QDCS----VVCT---NDAPCFPIMVP 855

  Fly   363 PDDEFFSAFGVRCLNFVRLSLVPSPDC----------QLSYGKQLTKVTHFVDASPVYGSSDEAS 417
            |:|..... ..||::.||    .||.|          .:...:|:.::|.::|||.||||||..|
 Frog   856 PNDPRVRN-NARCMSMVR----SSPVCGSGMTSLLMNSVYPREQMNQLTSYIDASNVYGSSDHES 915

  Fly   418 RSLR--AFRGGRLR--MMNDFGRDLLPL-TNDKKAC--PSEEAGKSCFHSGDGRTNQIISLITLQ 475
            ..:|  |...|.|:  ::...|:.|||. |.....|  ...|:...||.:||.|.|:.:.|.::.
 Frog   916 NEIRDSASHRGLLKQGIVQRSGKPLLPFATGPPTECMRDENESPIPCFLAGDHRANEQLGLTSMH 980

  Fly   476 ILLAREHNRVAGALHELNPSASDETLFQEARRIVIAEMQHITYNEFLPIIIGPQQMKRFRLVPLH 540
            .|..|||||:|..|..|||....:|::.|.|:||.|:||||||:.:||.|.|...||..      
 Frog   981 TLWFREHNRIATELLRLNPHWDGDTIYHETRKIVGAQMQHITYSHWLPKIFGDVGMKML------ 1039

  Fly   541 QGYSHDYNVNVNPAITNEFSGAAYRMGHSSV-------DGKFQ-IRQEHGRIDEVVNIPDVMFNP 597
             |....|:.|||..|.|||:.||:|.||:.:       |.||: |.|.|      |.:....|:|
 Frog  1040 -GEYKSYDPNVNAGILNEFATAAFRFGHTLINPILYRLDEKFEPIPQGH------VPLHRAFFSP 1097

  Fly   598 SRMRKREFYDDMLRTL--YSQPMQQVDSSISQGLSRFLFRGDNPFGLDLAAINIQRGRDQGLRSY 660
            .|:......|.:||.|  .:..|:.....::..|:..||...:...|||||:|:|||||.|:..|
 Frog  1098 FRIVNEGGIDPLLRGLIGVAAKMRVTSQLLNTELTEKLFSMAHAVALDLAALNVQRGRDHGIPPY 1162

  Fly   661 NDYLELMGAPKLHSFEQFPIEI-----AQKLSRVYRTPDDIDLWVGGLLEKAVEGGVVGVTFAEI 720
            :|:........:.:|:....||     .:||.|:|.:|.:|||:...::|..:.|..:|.|...:
 Frog  1163 HDFRVFCNLSTVQTFDDLRNEIKNPDVREKLKRLYGSPLNIDLFPALMVEDLIPGSRLGPTLMCL 1227

  Fly   721 IADQFARFKQGDRYYYEYDNGINPGAFNPLQLQEIRKVTLARLLCDNSDRLTLQAVPLAAFVRAD 785
            :..||...:.|||::||     |||.|...||.:|::.:|||:||||.|.:|  .|....|..|:
 Frog  1228 LTTQFRNIRDGDRFWYE-----NPGVFTAAQLTQIKQTSLARVLCDNGDNIT--KVQHDLFRVAE 1285

  Fly   786 HPGNQMIGCDDPNLPSVNLEAWR 808
            .| :..:.|  .|:..::|..|:
 Frog  1286 FP-HGYVSC--KNIAKMDLRVWQ 1305

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PxtNP_650648.3 GH64-TLP-SF <67..119 CDD:295337 4/12 (33%)
An_peroxidase 237..772 CDD:281139 201/574 (35%)
peroxinectin_like 396..767 CDD:188655 139/392 (35%)
pxdnNP_001076815.1 leucine-rich repeat 38..56 CDD:275380
LRR <54..235 CDD:227223
leucine-rich repeat 57..80 CDD:275380
LRR_8 104..163 CDD:338972
leucine-rich repeat 105..128 CDD:275378
leucine-rich repeat 129..152 CDD:275378
leucine-rich repeat 153..176 CDD:275378
leucine-rich repeat 177..189 CDD:275378
I-set 239..326 CDD:369462
I-set 335..422 CDD:369462
Ig3_Peroxidasin 439..512 CDD:143222
Ig4_Peroxidasin 535..603 CDD:143223 11/58 (19%)
peroxidasin_like 856..1295 CDD:188658 157/466 (34%)
VWC 1402..1452 CDD:214564
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D276568at2759
OrthoFinder 1 1.000 - - FOG0000202
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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