DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pxt and Lar

DIOPT Version :9

Sequence 1:NP_650648.3 Gene:Pxt / 42131 FlyBaseID:FBgn0261987 Length:809 Species:Drosophila melanogaster
Sequence 2:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster


Alignment Length:810 Identity:157/810 - (19%)
Similarity:251/810 - (30%) Gaps:259/810 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 SVRQNRFDEVPDLQTPAPLATSTESSKKPEKATSGLLKKCL------PCSDGIRCVPQIQCPAHV 83
            ||.:|: ||...|....||..||..      .::.|:..|:      ||.     .|........
  Fly  1371 SVNRNK-DEPEILWVVLPLMVSTFI------VSTALIVLCVVKRRRQPCK-----TPDQAAVTRP 1423

  Fly    84 RMESHEKPQICDLPAGKFGYCCETGQNHTAPKPETSPKERRSGFPTILSPAVLDEARRNFEHLMH 148
            .|.:       ||.||              |.|......||..|.|   |.::..          
  Fly  1424 LMAA-------DLGAG--------------PTPSDPVDMRRLNFQT---PGMISH---------- 1454

  Fly   149 GVAQIPVRRGFPDFAHGLVFHSTAKDDLHNFAISNSAIEQVMTTQLFGKKEQVPVEDFITNNVPI 213
              ..||:    .:||:.:  .....:|...|:....:||              |.:.|..:|..:
  Fly  1455 --PPIPI----SEFANHI--ERLKSNDNQKFSQEYESIE--------------PGQQFTWDNSNL 1497

  Fly   214 KFTE--------TPLAH-HCQPPPVCGNIRSVYRSMDGTCNNPEPQRSLWGAAGQPMERMLPPAY 269
            :..:        |...| ..|.|.|.|.:.|.|.:.: .|:......:.....|...|..:    
  Fly  1498 EHNKSKNRYANVTAYDHSRVQLPAVEGVVGSDYINAN-YCDGYRKHNAYVATQGPLQETFV---- 1557

  Fly   270 EDGIWTPRAHSSDGTPLLGARKISRTLLSDVDRPHPKYNLMVMQFGQVLAHDISQTSSIRLEDGS 334
              ..|.........|.::..|...||.:. .|:..|...  ...:||:.. .|::|..:......
  Fly  1558 --DFWRMCWELKTATIVMMTRLEERTRIK-CDQYWPTRG--TETYGQIFV-TITETQELATYSIR 1616

  Fly   335 LVQCCSPEGKVALSPQQSHFACMPIHVEPDDEF-FSAFGVRCLNFVRLSLVPSPD---------- 388
            ..|.|..........:|..|...|.|..||... |..|..||     .:|.| |:          
  Fly  1617 TFQLCRQGFNDRREIKQLQFTAWPDHGVPDHPAPFLQFLRRC-----RALTP-PESGPVIVHCSA 1675

  Fly   389 ------CQLSYGKQLTKVTH--FVDASPVYGSSDEASRSLRAFRGGRLRMMNDFGRDLLPLTNDK 445
                  |.:.....|.::.|  .:|   :||.    ...|||            .|:.:..|.|:
  Fly  1676 GVGRTGCYIVIDSMLERMKHEKIID---IYGH----VTCLRA------------QRNYMVQTEDQ 1721

  Fly   446 KACPSEEAGKSCFHSGDGRTNQIISLIT----------LQILLAREHNRVAGALHELNPSASDET 500
            ..         ..|  |.....||..:|          ||.||..|.......:         |.
  Fly  1722 YI---------FIH--DAILEAIICGVTEVPARNLHTHLQKLLITEPGETISGM---------EV 1766

  Fly   501 LFQEARRIVIAEMQHITYNEFLP--------IIIGPQQMKRFRLVPLHQGYSHDYNVNVNPAITN 557
            .|::...:.:...:.:|.|  ||        :.|.|.:..|..|.|:|.....||   ||.:.  
  Fly  1767 EFKKLSNVKMDSSKFVTAN--LPCNKHKNRLVHILPYESSRVYLTPIHGIEGSDY---VNASF-- 1824

  Fly   558 EFSGAAYRMGHSSVDGKFQ--------IRQEHG----------------------------RIDE 586
             ..|..||..:.:..|..|        :..||.                            |...
  Fly  1825 -IDGYRYRSAYIAAQGPVQDAAEDFWRMLWEHNSTIVVMLTKLKEMGREKCFQYWPHERSVRYQY 1888

  Fly   587 VVNIPDVMFNPSRMRKREFYDDMLRTLYSQPMQQVDSSISQGLSRFLFRGDNPFGLDLAAINIQR 651
            .|..|...:|..:.:.|||.....|...|:.::|.         :|:   |.|            
  Fly  1889 YVVDPIAEYNMPQYKLREFKVTDARDGSSRTVRQF---------QFI---DWP------------ 1929

  Fly   652 GRDQGL-RSYNDYLELMGAPKLH-SFEQF----PIEIAQKLSRVYRTPDDIDLWVGGLLEKAVEG 710
              :||: :|...:::.:|  ::| :.|||    ||.: ...:.|.|:...|.|.:  :||:....
  Fly  1930 --EQGVPKSGEGFIDFIG--QVHKTKEQFGQDGPITV-HCSAGVGRSGVFITLSI--VLERMQYE 1987

  Fly   711 GVVGV--TFAEIIADQFARFKQGDRYYYEY 738
            ||:.|  |...:.:.:.|..:..|:|::.|
  Fly  1988 GVLDVFQTVRILRSQRPAMVQTEDQYHFCY 2017

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PxtNP_650648.3 GH64-TLP-SF <67..119 CDD:295337 9/51 (18%)
An_peroxidase 237..772 CDD:281139 112/583 (19%)
peroxinectin_like 396..767 CDD:188655 81/407 (20%)
LarNP_001260594.1 Ig 35..129 CDD:299845
I-set 36..129 CDD:254352
IG_like 146..227 CDD:214653
Ig 159..228 CDD:299845
I-set 234..318 CDD:254352
Ig3_RPTP_IIa_LAR_like 249..317 CDD:143216
fn3 324..404 CDD:278470
FN3 423..514 CDD:238020
FN3 520..610 CDD:238020
FN3 616..707 CDD:238020
FN3 712..810 CDD:238020
FN3 832..907 CDD:238020
FN3 914..1005 CDD:238020
FN3 1012..1101 CDD:238020
fn3 1106..1198 CDD:278470
PTPc 1476..1731 CDD:214550 57/315 (18%)
PTPc 1503..1731 CDD:238006 51/274 (19%)
PTPc 1763..2022 CDD:214550 60/303 (20%)
PTPc 1791..2022 CDD:238006 54/264 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2408
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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