DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pxt and Ptgs1

DIOPT Version :9

Sequence 1:NP_650648.3 Gene:Pxt / 42131 FlyBaseID:FBgn0261987 Length:809 Species:Drosophila melanogaster
Sequence 2:NP_058739.4 Gene:Ptgs1 / 24693 RGDID:3439 Length:602 Species:Rattus norvegicus


Alignment Length:577 Identity:129/577 - (22%)
Similarity:204/577 - (35%) Gaps:161/577 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   295 TLLSDVDRPHPKYNLMVMQFGQVLAHDISQTSSI-------RLEDGSLVQCCSP---EGKVAL-- 347
            |:.|::....|.||         .|||.....|.       |:.......|.:|   :||..|  
  Rat   120 TVRSNLIPSPPTYN---------TAHDYISWESFSNVSYYTRILPSVPKDCPTPMGTKGKKQLPD 175

  Fly   348 ----------------SPQQSH--FACMPIHVEPDDEFFSAFGVRCLNFVRLSLVPSPDCQLSYG 394
                            :||.::  ||....|.  ..:||...|                   ..|
  Rat   176 IHLLAQRLLLRREFIPAPQGTNVLFAFFAQHF--THQFFKTSG-------------------KMG 219

  Fly   395 KQLTK-VTHFVDASPVYGSSDEASRSLRAFRGGRLRMMNDFGRDLLP-------LTNDKKACPSE 451
            ...|| :.|.||...:||.|.|....||.|:.|:|:.....|....|       |.......|.|
  Rat   220 PGFTKALGHGVDLGHIYGDSLERQYHLRLFKDGKLKYQVLDGEVYPPSVEQASVLMRYPPGVPPE 284

  Fly   452 E---AGKSCFHSGDGRTNQIISLITLQILLAREHNRVAGALHELNPSASDETLFQEARRIVIAE- 512
            :   .|:..|       ..:..|:....:..||||||...|.|.:|:..||.|||..|.|:|.| 
  Rat   285 KQMAVGQEVF-------GLLPGLMLFSTIWLREHNRVCDLLKEEHPTWDDEQLFQTTRLILIGET 342

  Fly   513 --------MQHITYNEFLPIIIGPQQMKRFRL-----VPLHQGYSHDYNVNVNPAITNEFSGAAY 564
                    :||:: ..||.:...|:.:.|.:.     :.|.  ::|.|:                
  Rat   343 IKIIIEEYVQHLS-GYFLQLKFDPELLFRAQFQYRNRIALE--FNHLYH---------------- 388

  Fly   565 RMGHSSVDGKFQI-RQEHGRIDEVVNIPDVMFNPSRMRKREFYDDMLRTLYSQPMQQVDSSISQG 628
              .|..:...||: .||:       :....:||.|.:     .|..:..|.....:|....|..|
  Rat   389 --WHPLMPDSFQVGSQEY-------SYEQFLFNTSML-----VDYGVEALVDAFSRQRAGRIGGG 439

  Fly   629 LSRFLFRGDNPFGLDLAAINIQRGRDQGLRSYNDYLELMGAPKLHSFEQF--PIEIAQKLSRVYR 691
                  |..:...|.:|...|:..|:..|:|:|:|.:..|.....||::|  ..|:|.:|..:|.
  Rat   440 ------RNFDYHVLHVAEDVIKESREMRLQSFNEYRKRFGLKPYTSFQEFTGEKEMAAELEELYG 498

  Fly   692 TPDDIDLWVGGLLEKAVEGGVVGVTFAEIIADQFARFKQGD-----RYYYEYDNGINPGAF-NPL 750
            ..|.::.:.|.:|||.....:.|.:..|:.|....:...|:     .|:       .|..| ..:
  Rat   499 DIDALEFYPGLMLEKCQPNSLFGESMIEMGAPFSLKGLLGNPICSPEYW-------KPSTFGGDV 556

  Fly   751 QLQEIRKVTLARLLCDNSDRLTLQAVPLAAFVRADHPGNQMIGCDDPNL---PSVNL 804
            ....:...:|.:|:|     |..:..|..:|...|:||      ||.::   ||..|
  Rat   557 GFNIVNTASLKKLVC-----LNTKTCPYVSFRVPDYPG------DDGSVFVRPSTEL 602

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PxtNP_650648.3 GH64-TLP-SF <67..119 CDD:295337
An_peroxidase 237..772 CDD:281139 118/540 (22%)
peroxinectin_like 396..767 CDD:188655 94/404 (23%)
Ptgs1NP_058739.4 EGF_CA 35..72 CDD:238011
prostaglandin_endoperoxide_synthase 92..578 CDD:188648 119/545 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2408
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.