DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment osa and LFR

DIOPT Version :10

Sequence 1:NP_524392.2 Gene:osa / 42130 FlyBaseID:FBgn0261885 Length:2716 Species:Drosophila melanogaster
Sequence 2:NP_566721.1 Gene:LFR / 821873 AraportID:AT3G22990 Length:460 Species:Arabidopsis thaliana


Alignment Length:480 Identity:91/480 - (18%)
Similarity:168/480 - (35%) Gaps:138/480 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly  2066 NSTEEQTFNKKRRLVSGGSSSSGAHAEGKKSKLT-------------SEEFAQPNAEVKKEPGTA 2117
            ||..||   ..||:|.       |...|.||::|             .|:..:....:.|..|..
plant    61 NSFVEQ---NNRRIVL-------ALQSGLKSEVTWALNTLTLLSFKEKEDIRRDVMPLAKIAGLL 115

  Fly  2118 DSDCRPVD--MDIEAPQQRLTNG--VAPCSSTPAI------FDPRTT--------AKDEARVLQR 2164
            |:....:|  .||..|:. ||.|  |....:..::      :|...:        ....|..|.:
plant   116 DALLLIIDDWRDIALPKD-LTRGTRVRTLGTNASVTGFGNEYDALASIQPPGSGIGSSAAEALGK 179

  Fly  2165 RRDSSFEDECYTRDEASLHLVSESQDSLARRC-IALSNIFRNLTFVPGNETVLAKSTRFLAVLGR 2228
            :.....:...:..:|..|..:.:...|..:.| ||.||:.||.:|:|.||.|:|:....|..:.:
plant   180 KSTGKHQSSQWWMEEDGLFNLDDEGRSEKQMCAIAASNVIRNFSFMPDNEVVMAQHRHCLETVFQ 244

  Fly  2229 LLLLNHEHLRRTPKTRNYDREEDTDFSDSCSSLQGEREWWWDYLITIRENMLVAMANIAGHLELS 2293
            .:   |:|:           .||.:                  |:|   |.|..:.|:|..::|.
plant   245 CI---HDHM-----------TEDEE------------------LVT---NSLETIVNLAHLMDLR 274

  Fly  2294 RY----------DELIARPLIDGLLHWAVCPSAHGQDPFPSCGPNSVLSPQRLALEALCKLCVTD 2348
            .:          :|..|...:.|:|:                  :||.:....|.|.|.:|.:..
plant   275 IFSSLKQSYININEKKAVQAVVGILN------------------SSVKAWNCAAAELLGRLIINP 321

  Fly  2349 ANVDLVIATPPFSRLEKLCAVLTRHLCRNEDQVLREFSVNLLHYLAAADSAMARTVALQSPCISY 2413
            .|...:  :|...::.|              :::...|:..:...|||..|:...|.:...|...
plant   322 DNEPFI--SPLIPQIHK--------------RLIDLLSIQAVDAQAAAVGALYNLVEVNMDCRLK 370

  Fly  2414 LVAFIEQAEQTALGVANQHGINYLRENPDSMGTSLDMLRRAAGTLLHLAKHPDNRSLFMQQEQRL 2478
            |.:.....::....:...|.:.             ::.|:||..|.:|...|.||.|.:..|...
plant   371 LASERWAVDRLLKVIKTPHPVP-------------EVCRKAAMILENLVSEPQNRGLLLAYENAF 422

  Fly  2479 LGLVMSHILDQQVALIISRVLYQVS 2503
            ..|:..   :.:.:...:|:||:::
plant   423 AELLFQ---EGKYSDSFARILYELT 444

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
osaNP_524392.2 PHA03247 <640..977 CDD:223021
ARID_ARID1A-like 1001..1093 CDD:350629
BAF250_C 2191..2451 CDD:463439 48/270 (18%)
LFRNP_566721.1 BAF250_C 212..>235 CDD:463439 12/22 (55%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.