DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment osa and Arid5b

DIOPT Version :9

Sequence 1:NP_001163639.1 Gene:osa / 42130 FlyBaseID:FBgn0261885 Length:2716 Species:Drosophila melanogaster
Sequence 2:XP_006514192.1 Gene:Arid5b / 71371 MGIID:2175912 Length:1214 Species:Mus musculus


Alignment Length:853 Identity:172/853 - (20%)
Similarity:259/853 - (30%) Gaps:300/853 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   783 GSPTPPQGPQGYGNGPTGMHPGMPMGPPHHMGPPHGPTNMGPPTSTPPQSQMLQGGQPQGQGASG 847
            |||           ||.....|:.:.|.|.....|..|:....|.|...:..:.|....|:|...
Mouse    29 GSP-----------GPRAELGGVIVTPLHTHTHTHTHTHTHTHTHTHTHTGTILGSLRPGRGGRE 82

  Fly   848 GPESGG-----PEHISQDNGI-------SSSGPTGAA---------------------------- 872
            |....|     |.   |...|       :||.|...|                            
Mouse    83 GARPPGQALCLPR---QSRVIRLRLLRAASSAPGSRAFEDEVIAVSEKVIVKLEDLVKWAHSDFS 144

  Fly   873 ----GMHAVTSVVTTGPDGTSMDEV---SQQSTLSNA---------SAASGEDPQCTT------- 914
                |:.| |.|.|.........|.   .:||||::.         .|..|||.:.|.       
Mouse   145 KWRCGLRA-TPVKTEAFGRNGQKEALLRYRQSTLNSGLNFKDVLKEKADLGEDEEETNVIVLSYP 208

  Fly   915 ---------------PKSRKNDPYSQS--HLAPPSTSP----------HPVVMHPGGGPGEEYDM 952
                           |.|...|.::.:  .:|..|.:|          ||.::        |.:.
Mouse   209 QYCRYRSMLKRIQDKPSSILTDQFALALGGIAVVSRNPQILYCRDTFDHPTLI--------ENES 265

  Fly   953 SSPPNWPRPAGSPQVFNHVPVPQEPF----------------------RSTITTTKKSDSLCKLY 995
            ......|...|.|:.....|..::.|                      ||.:|..|.:.:.||..
Mouse   266 VCDEFAPNLKGRPRKKKTCPQRRDSFSGSKDPNNNCDGKVISKVKGEARSALTKPKNNHNNCKKT 330

  Fly   996 EMDDNP----------DRRGWLDKLRAFMEERRTPITACPTISKQPLDLYRLYIYVKERGGFVEV 1050
            ..::.|          |.:.:|..|..:|:||:|||...|.:..:.::|:.::...::.||:..:
Mouse   331 SNEEKPKLSIGEECRADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETI 395

  Fly  1051 TKSKTWKDIAGLLGIG-ASSSAAYTLRKHYTKNLLTFECHFDRGDID-PLPII--QQVEAGSKKK 1111
            |..:.||.|...||.. .|:|||...|:||.:.:|.:| .|.:|:.| |||.|  ::.|..:::.
Mouse   396 TARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYE-RFIKGEEDKPLPPIKPRKQENNTQEN 459

  Fly  1112 TAKAASVPSPGGGHLDAGTTNSTGSSNSQDSFPAPPGSAPNAAIDGYPGYPGGSPYPVASGPQP- 1175
            ..|                |..:|:...:...........|.                   |:| 
Mouse   460 ENK----------------TKVSGNKRIKQEMAKNKKEKENT-------------------PKPQ 489

  Fly  1176 DYATAGQMQRPPSQ--NNPQTPHPGAAAAVAAGDNISVSNPFEDPIAAGGGPGSGTGPGPGQGPG 1238
            |.:.....||...:  |:...|.|..|..|                               :|..
Mouse   490 DTSEVSSEQRKEEETLNHKSAPEPLPAPEV-------------------------------KGKP 523

  Fly  1239 PGAASGGAGAVGAVGGGPQPHPPPPHSPHTAAQQAAGQHQQQHPQHQ-----HPGLPGPP-PPQQ 1297
            .|....||.|           |.....|..|.:...|.:.::..:..     .|.||.|| ||::
Mouse   524 EGHKDLGARA-----------PVSRADPEKANETDQGSNSEKEAEEMGDKGLAPLLPSPPLPPEK 577

  Fly  1298 QQGQQGQQPPPSVGGGP--PPAPQQHGPGQVPP-----SPQQHVRPAAGAPYPPGGSGYPTPVSR 1355
            ...     |.|..|..|  .|:.|.....:..|     ||::.::   |||:....:..|     
Mouse   578 DSA-----PTPGAGKQPLASPSTQMDSKQEAKPCCFTESPEKDLQ---GAPFSSFSATKP----- 629

  Fly  1356 TPGSPYPSQPGA------------------YGQYGSSDQYNATGPPGQPFGQGPGQYPPQNRNMY 1402
                |..||..|                  ..|.||.|.:.|       ..|.|.....|:.:|:
Mouse   630 ----PLTSQNEAEEEQLPATANYIANCTVKVDQLGSDDIHTA-------LKQTPKVLVVQSFDMF 683

  Fly  1403 PPYGPEGEAPPTGANQYGPYGSRPYSQPPPGGPQPPTQTVAGGPPAGGAPGAPPSSAYPTGRPSQ 1467
            ......|   |...|....|....||:..||...|    :|.........||..||:||      
Mouse   684 KDKDLTG---PMNENHGLNYTPLLYSRGNPGIMSP----LAKKKLLSQVSGASLSSSYP------ 735

  Fly  1468 QDYYQPPP 1475
              |..|||
Mouse   736 --YGSPPP 741

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
osaNP_001163639.1 BRIGHT 1001..1092 CDD:128777 30/101 (30%)
DUF3518 2191..2451 CDD:288854
Arid5bXP_006514192.1 PTZ00121 <437..>562 CDD:173412 30/201 (15%)
ARID_ARID5B 347..441 CDD:350649 30/94 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1374
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.940

Return to query results.
Submit another query.