DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment osa and arid1b

DIOPT Version :10

Sequence 1:NP_524392.2 Gene:osa / 42130 FlyBaseID:FBgn0261885 Length:2716 Species:Drosophila melanogaster
Sequence 2:XP_005160411.2 Gene:arid1b / 569589 ZFINID:ZDB-GENE-030131-4459 Length:2169 Species:Danio rerio


Alignment Length:2629 Identity:753/2629 - (28%)
Similarity:1003/2629 - (38%) Gaps:736/2629 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 GPPTPNNNSNN--GSDPSIQQQQQNVAP--HPYGAPPPPGSGPGGPPGPDPAAVMHYHHLHQQQQ 101
            ||.:.|||:||  |...:.|....:|:.  :.|      |:|.|||        ....|..||..
Zfish   111 GPASNNNNNNNSGGGGSASQSGSSSVSEFNNYY------GNGRGGP--------CFDQHGGQQSP 161

  Fly   102 Q----HPPPPHMQQQQ-----HHGGPAPPPPGGAPEHAPGVKEEYTHLP---PPHPHPAYGRYHA 154
            :    |..|.:|.|.|     :|..|                  |.|.|   |.:....||.   
Zfish   162 RTALIHQAPGNMDQVQNSHEGYHNNP------------------YNHYPNYRPGYGGAGYGM--- 205

  Fly   155 DPNMDPYRYGQPL-PG-GKPPQQQQPHPQ-QQPPQQPGPG---GSPNRPPQQRYIPGQPPQGPTP 213
               |.|.|.|..: || ..|......|.: ......|.||   ||..|.|.|..   |.|.|.||
Zfish   206 ---MSPSRQGNMMGPGTNSPTAAAASHGKAAMASTTPAPGANVGSFQRFPGQNQ---QHPSGATP 264

  Fly   214 TLNSLLQSSNPPPPPQHRYANTYDPQQAAASAAAAAAAQQQQAGGPPPPGHGPPPPQHQPSPYG- 277
            |||.||.|   |.|....|...|.......|       ||||:|    .|.|    :...|||. 
Zfish   265 TLNQLLTS---PSPMMRGYGGGYQDYSNPPS-------QQQQSG----MGLG----KDMSSPYSP 311

  Fly   278 GQQGGWAPPPRPYSPQLGPSQ------QYRTPPPTNTSR------GQSPY-------------PP 317
            .....||...|.: |.:.|..      |..|..|....|      |.|||             |.
Zfish   312 AASHSWAAQQRNH-PAMSPGNNGNSRAQVATMDPMTMKRSQMYGMGNSPYSQQGTYAGQPYGSPT 375

  Fly   318 AHG-----QNSGSYPSSPQQQQQQQQQQQQQAGQQPGGPVPGGPPPGTGQQPPQQNTPPTSQYSP 377
            ||.     |..|.......|..||||...|...|...|....|.||..  .||||.:...|| .|
Zfish   376 AHRYPMGMQGRGQVGIGGMQYSQQQQMPAQYGPQGMSGYCQQGQPPYF--SPPQQQSAAPSQ-PP 437

  Fly   378 Y-PQRYPTPPGL---------PAGGSNHRTAYSTHQYPEPNRPWPGGSSPS-PGSGHPLPPASPH 431
            | .||.||....         .:|..||.....|.|    :||   .|.|. .||...||..:..
Zfish   438 YMQQRAPTQQDTLQEGYGSRGQSGKPNHDDMGLTQQ----DRP---SSLPDLSGSIDDLPTGTEA 495

  Fly   432 HVPPLQQQPPPPPHVSAGGPPPSSSPGHAPSPSPQPSQASPSPHQELIGQNSNDSSSGGAHSGMG 496
            .:...         |||.|  .:||.|...:|:..|.....||..                ..|.
Zfish   496 GLSSA---------VSASG--STSSQGEQSNPAQSPFSPHASPRV----------------PSMR 533

  Fly   497 SGPPGTPNPQQVMRPTPSPTGSSGSRSMSPAVAQNHPISRPASNQSSSGGP-MQQPPVGAGGPPP 560
            |||  :|:      |..||.|||.|||        .||| |||      || .|..|...|..|.
Zfish   534 SGP--SPS------PVGSPVGSSQSRS--------GPIS-PAS------GPGTQMAPQTPGNVPD 575

  Fly   561 MPPHPGMPGGPPQQQQSQQQQASNSASSASNSP--QQTPPPAPPPNQGMNNMATPPPPPQGAAGG 623
            :..|......|..|::.   .|||...:|..|.  .|.|.|:..|:.          .|.|    
Zfish   576 VGSHSTHSQSPMSQERG---YASNMQRNAPGSQFGGQQPGPSMSPHS----------CPTG---- 623

  Fly   624 GYPMPPHMHGGYKMGGPGQSPGAQGYPPQQPQQYPPGNYPPRPQY--PPGAYATGPPPPPTSQAG 686
              || .|..|.|:||        ..|.||..|..|.||||....|  .|||..:||.|      |
Zfish   624 --PM-HHSVGSYQMG--------PSYGPQSGQYGPSGNYPRPANYGGAPGANYSGPGP------G 671

  Fly   687 AG---GAN-SMPSGAQAGGYP------GRGMPNHTGQYPPYQWVPPSPQQTVPGGAPGGAMVGNH 741
            .|   |.| |.|...|..|.|      .|| |.|.....||    |:...:|...:|      |.
Zfish   672 MGNSLGMNASSPMHGQGPGQPCGSMTTARG-PGHAAGGRPY----PAGSSSVAPTSP------NM 725

  Fly   742 VQGKGT---PPPPVVGGPPPPQGSGSPRPLNYLKQHL----QHKGGYGGSPTPPQGPQGYG-NGP 798
            .|..|.   ||||.||..|...|..|      .:|:|    |.:..:|.||..|      | :||
Zfish   726 PQSAGPGMGPPPPNVGRKPHESGPAS------AQQNLVPSSQARPPFGRSPVYP------GLSGP 778

  Fly   799 TGMHP-GMPMGPPHHMGPPHGPTNMGPPTSTPPQSQMLQGGQPQGQ-----GASGGPE-----SG 852
            .|..| ...:..|||   ||..:..|.             |||..:     |..||..     .|
Zfish   779 GGRPPASFSLPQPHH---PHYSSGQGQ-------------GQPHAELYGPAGYQGGSHMLGMGPG 827

  Fly   853 GPEHISQDNGISSSGPTGAAGMHAVTSVVTTGPDGTSMDEVSQQSTLSNAS-AASGEDPQCTTPK 916
            ||..:...|..:...|.|.:     .:.:.|||...|.|.:........|. ...|..|....||
Zfish   828 GPYSLPPSNSSARMTPQGPS-----YNTMPTGPMTGSGDTMMPTDPKQRAEHKEEGSTPATEPPK 887

  Fly   917 SRKNDPY-SQSHLAPPSTSP-HPVVMHPGGGPGEEYDMSSPPNWPRPAGSPQVFNHVPVPQEPFR 979
            .:.|  | ||....||:.|| .|.........|::.|..|.|.||:.            |..|..
Zfish   888 PKDN--YGSQCVSQPPTPSPLSPSPASLSSYQGDDSDSISSPAWPKN------------PSSPKH 938

  Fly   980 STITTTKKSDSLCKLYEMDDNPDRRGWLDKLRAFMEERRTPITACPTISKQPLDLYRLYIYVKER 1044
            ||:..|  ::.:.:||:|...|:||.|:|:..||||||.||:...|::.|:||||.|||:.|:|.
Zfish   939 STVNMT--NEKITRLYDMGCEPERRAWVDRYIAFMEERGTPVPNLPSVGKKPLDLCRLYLCVREI 1001

  Fly  1045 GGFVEVTKSKTWKDIAGLLGIGASSSAAYTLRKHYTKNLLTFECHFDRGDIDPLPIIQQVEAGSK 1109
            ||...|.|:|.|::::..|.:|.|||:|.:|:|.|.:.|..:||..:||: :|.|....:..|.|
Zfish  1002 GGLAMVNKNKKWRELSTHLNVGTSSSSASSLKKQYIQYLFAYECKVERGE-EPPPDAFAMGDGKK 1065

  Fly  1110 KKTAKAASVPSP-GGGHLDA-GTTNSTGSSNSQ----DSFPAPPGSAPNAAIDGYPGYPGGS--- 1165
            ::.......||| ..|.|.. .|..|||||...    |..|..|.:.|:..:...|......   
Zfish  1066 QQQQAKIQPPSPANSGSLQGPQTPQSTGSSTMTEMPGDLKPPTPATTPHGQVTPQPAVRNSGISV 1130

  Fly  1166 PYPVASGPQPDYATAGQMQRPPSQNNPQTPHPGAAAAVAAGDNISVSNPFEDPIAAGGGPGSGTG 1230
            ..|.:.|..|.:...|.|            |.|:..|.:.....:..:||  ..|..||..|.. 
Zfish  1131 QDPFSEGSDPAFQKRGPM------------HGGSGDATSRMQFDTSKDPF--GAARKGGSESFV- 1180

  Fly  1231 PGPGQGPGPGAAS-GGAGAVGAVGGGPQPHPPPPHSPHTAAQQAAGQHQQQHPQHQHPGLPGPPP 1294
              |||.||.|... ...|....:|.||:|            |.:.....::.|.|    :.||..
Zfish  1181 --PGQMPGSGMQEMYSRGPSSGMGMGPRP------------QYSYNPGFERRPDH----VMGPEG 1227

  Fly  1295 PQQQQGQQGQQPP----PSVGGGPPPAPQQHGPGQVPPSPQQHVRPAAGAPYPPGGSGYPTPVSR 1355
            .....|.|....|    ||:..|...|..|          .:|           |..||      
Zfish  1228 GIAASGNQNNMVPSSSDPSMFSGSRYASHQ----------SRH-----------GHDGY------ 1265

  Fly  1356 TPGSPYP-SQP-GAYGQYGSSDQYNATGPPGQPFGQGPGQY-PPQNRNMYPPYGPE-GEAPPTGA 1416
              |..|| |.| ||:|.|.....|..   ||:      |.| ||..|:....||.: |...|...
Zfish  1266 --GQQYPHSMPYGAHGMYPQQQGYKR---PGE------GMYGPPAKRHESEAYGMQYGGQQPDMY 1319

  Fly  1417 NQYGPYGSRPYSQP----------PPGGPQPPTQTVAGG--PPAGGAPGAPPSSAYPTGRPSQQD 1469
            :|||....||...|          .|||..||..::..|  ||:..:.|.|..:.:.|       
Zfish  1320 SQYGYPERRPMQSPFPYGYGRDRMQPGGQGPPQHSMMSGGPPPSSNSSGGPQGNMWHT------- 1377

  Fly  1470 YYQPPPDQSPQPRRHPDFIKDSQPYPGYNARPQIYGAWQSGTQQYRPQYPSSPAPQNWGGAPPRG 1534
                         || |.   ..|||               |:|                     
Zfish  1378 -------------RH-DM---GYPYP---------------TRQ--------------------- 1389

  Fly  1535 AAPPPGAPHGPPIQQPAGVAQWDQHRYPP-QQGPPPPPQQQQQPQ-QQQQQPPY-QQVAGPPGQQ 1596
                   .||||              ||. .:|..|..:..|:.| ..|:|.|| ...:......
Zfish  1390 -------SHGPP--------------YPSMSRGDDPEARVSQESQWPGQRQSPYPSHSSSSSSSM 1433

  Fly  1597 PPQAPPQWAQMNPGQTAQSGIAPPGSPLRPPSGPGQQNRMPGMPAQQQQSQQQGGVPQPPPQQAS 1661
            ||.|..|               ||.|...||:.|...:|                ||.|.|...|
Zfish  1434 PPMASRQ---------------PPSSYQSPPAMPNHISR----------------VPSPAPFPRS 1467

  Fly  1662 HGGVPSPGLPQVGPGGMVKPPYAMPPPPSQGVGQQVGQGPPGGMMSQKPPPMPGQAMQQQPLQQQ 1726
            .||..||....:                               |.|.|....||           
Zfish  1468 VGGSMSPTKAHM-------------------------------MASLKQMQKPG----------- 1490

  Fly  1727 PPSHQHPHPHQHPQHQHPHQMPPNQTAPGGYGPPGMPGGGAQLVKKELIFPHDSVESTTPVLYRR 1791
                            .|..||.:|:.       |:||.|...:.:|:.:|.||||:|.|.|..|
Zfish  1491 ----------------GPVSMPSSQSG-------GLPGQGFPSIHREVNYPLDSVEATQPQLKPR 1532

  Fly  1792 KRLMKADVCPVDPWRIFMAMRSGLLTECTWALDVLNVLLFDDSTVQFFGISNLPGLLTLLLEHFQ 1856
            :||...|:...:.||:.|:::||||.|.|||||.:|:||:||:||..||:|.|||.|.|::|.|:
Zfish  1533 RRLTSKDIGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDNTVSSFGLSQLPGFLELIVEFFR 1597

  Fly  1857 KNLAEMF---DERE--NEEQSALLAEDADDDADSGTVMCEKLRTSGRQPRC----VRSISSYNRR 1912
            :.|.|:|   :|.|  .|.|..||...::.             |..:||..    .:||:.:..:
Zfish  1598 RCLIEIFGILEEYEVGTEGQKTLLGSCSEP-------------TEKQQPSTPDFKSQSIAEHVEK 1649

  Fly  1913 R-----------------HYENMDRSGKDGAGNGSDSEDADEGIDLGQVRVQPNPEERSLLLSFT 1960
            |                 ..|..:.|.:|.|    |.|:.:.|.| ....|:|.|::.|      
Zfish  1650 RLDVEPEKPQPSSSAAALVMEKKEESAEDKA----DDEEKNTGKD-PCPPVEPRPKQAS------ 1703

  Fly  1961 PNYTMVTRKGVPVRIQ--PAENDIFVDERQKAWDIDTNRLYEQLEPVGSDAWTYGFTEPDPLDGI 2023
             .|..     :||:|:  .||.|. |::|.:                              |.|:
Zfish  1704 -KYDR-----LPVKIEEKDAEEDC-VEDRSE------------------------------LLGL 1731

  Fly  2024 IDVFKSEIVNIPFARYIRSDKKGRKRTELASSSRKPEIKT--EENSTEEQTFNKKRRLVSGGSSS 2086
            ...|||                |....:.........|:|  |.:..|||..          .:.
Zfish  1732 AGEFKS----------------GLLHWKAGGGDSTAHIQTYFERSWEEEQPL----------ENQ 1770

  Fly  2087 SGAHAEGKKSKLTSEEFAQPNAEVKKE-PGTADSDCRPVDMDIEAPQQRLTNGVAPCSSTPAIFD 2150
            .|..|.|||   |.||..:...|:|:| ||.::.:......|:      |.:.....|...:...
Zfish  1771 EGVQAIGKK---TVEEQPRGQEELKRELPGPSEENLTATVDDV------LKSNPGSISEGESQTF 1826

  Fly  2151 PRTTAKDEARVLQRRRDSSFEDECYTRDEASLHLVSESQDSLARRCIALSNIFRNLTFVPGNETV 2215
            |..|.::::.:      :..|||....|||.|.:....||.||:|||.:|||.|.|:|||||::.
Zfish  1827 PFRTRENKSSI------TLLEDEPRCWDEAPLSVAESWQDELAKRCICVSNIIRGLSFVPGNDSE 1885

  Fly  2216 LAKSTRFLAVLGRLLLLNHEHLRRTPKTRNYDREEDTDFSDSCSSLQGEREWWWDYLITIRENML 2280
            ||:....:.:||:|:||:|||.:|......|.|||:...  :||    :.|||||.|..:|||.|
Zfish  1886 LARHPGLVLILGKLVLLHHEHPKRKRMPATYQREEERGL--ACS----KDEWWWDCLGALRENTL 1944

  Fly  2281 VAMANIAGHLELSRYDELIARPLIDGLLHWAVCPSAHGQDPFPSCGPNSVLSPQRLALEALCKLC 2345
            |.:|||:|.|:||.|.|.|..|::||||||.|||||..||||.:....|.|:||||.||.||||.
Zfish  1945 VTLANISGQLDLSVYPESICLPILDGLLHWMVCPSAEAQDPFCTANGFSSLTPQRLVLECLCKLS 2009

  Fly  2346 VTDANVDLVIATPPFSRLEKLCAVLTRHLCRNEDQVLREFSVNLLHYLAAADSAMARTVALQSPC 2410
            :.|:||||::|||||.|.|:|.|.|.||:...:.||.||.:|.:|..||..|...||.||||...
Zfish  2010 IQDSNVDLLLATPPFGRQERLFATLVRHVGDRKSQVCREMAVAVLSNLAQGDPTAARAVALQKGS 2074

  Fly  2411 ISYLVAFIEQAEQTALGVANQHGINYLRENPDSMGTSLDMLRRAAGTLLHLAKHPDNRSLFMQQE 2475
            :..|::|:|.:...|....:.|.:.::..:......|::|:.|||..||.:|:..:||..|:..|
Zfish  2075 VGALISFLEDSVAMAQYQQSPHSLLHMGHSTQHEPPSINMMCRAAKALLAMAQVEENRPEFVLYE 2139

  Fly  2476 QRLLGLVMSHILDQQVALIISRVLYQVSR 2504
            .|||.:.:|.:|:..||.|:..||:::.|
Zfish  2140 SRLLDISLSSVLNSGVAAILCEVLFKLGR 2168

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
osaNP_524392.2 PHA03247 <640..977 CDD:223021 102/370 (28%)
ARID_ARID1A-like 1001..1093 CDD:350629 42/91 (46%)
BAF250_C 2191..2451 CDD:463439 119/259 (46%)
arid1bXP_005160411.2 None

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