DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment osa and Arid3b

DIOPT Version :9

Sequence 1:NP_001163639.1 Gene:osa / 42130 FlyBaseID:FBgn0261885 Length:2716 Species:Drosophila melanogaster
Sequence 2:NP_001366282.1 Gene:Arid3b / 56380 MGIID:1930768 Length:568 Species:Mus musculus


Alignment Length:495 Identity:128/495 - (25%)
Similarity:189/495 - (38%) Gaps:99/495 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   767 PLNYLKQHLQHKGGYGGSPTPP---------QGPQG------YGNGPTGMHPGMPMGPPHHMGPP 816
            ||...:|..|.|     .|..|         ||||.      |.: ..|..|.:....|   |.|
Mouse     3 PLQQQQQQQQQK-----QPQQPLLQMDAREKQGPQTRESQFLYAS-KLGTQPALLSITP---GRP 58

  Fly   817 HGPTNMGPPTSTPPQSQMLQGGQPQGQGASGGPESGGPEHISQDNGISSSGPTGAAG----MHAV 877
            .|.:.:||....||.:.:.:..:.....:....|.||.|....|:.::......|..    .|  
Mouse    59 SGSSVLGPLARVPPATPVARMSEQSNVNSEPEEEEGGLEDEDGDDDVAEVAEKEAQAASKYFH-- 121

  Fly   878 TSVVTTGPDGTSMDEVSQQ----STLSNASAASGEDPQCTTPKSRKNDPYSQSHLAPPSTSPHPV 938
                        |.:|::|    :.:|:.....|..||   .:..|.|....:..||||.   |.
Mouse   122 ------------MQKVTRQEPRATPMSSLLPVPGLSPQ---GQQTKEDHTKDASKAPPSV---PT 168

  Fly   939 VMHPGGGPGEEYDMSSPPNWPRPAGSPQVFNHVPVPQEPFRSTITTTKKSDSLCKLYEMDDNPDR 1003
            ...|.....|:...:....|...|...:                 ..:.|....||||:|.:|:|
Mouse   169 AGQPSWSLDEQLKQNGALAWSDDADGGR-----------------GREISRDFAKLYELDGDPER 216

  Fly  1004 RGWLDKLRAFMEERRTPITACPTISKQPLDLYRLYIYVKERGGFVEVTKSKTWKDIAGLLGIGAS 1068
            :.:||.|..||::|.|||...|.::||.||||.||..|.|:||.||:...|.|::|...|.:..|
Mouse   217 KEFLDDLFIFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTS 281

  Fly  1069 -SSAAYTLRKHYTKNLLTFECHFDRGDIDPLPIIQQVEAGSKKKTAKAASVPSPGGGHLDAGTTN 1132
             :|||:|||..|.|.|..:||                   .||..:..|.:.:...|:...|...
Mouse   282 ITSAAFTLRTQYMKYLYAYEC-------------------EKKALSSPAELQAAIDGNRREGRRP 327

  Fly  1133 STGSSNSQDSFPAPPGSAPNAAIDGYPGYPGGSPYPVASGPQPDYATAG-QMQRPPSQNNPQTPH 1196
            |..||....|..|...:|..||.........|:| .:.|.|:..::..| ......|.::|:.| 
Mouse   328 SYSSSLFGYSPAAAAAAAAAAAAAAASAASAGTP-ALLSSPKIRFSILGLGSSSGTSASSPRIP- 390

  Fly  1197 PGAAAAVAAGDNISVSNPFEDPIAAGG---GPGSGTGPGP 1233
              .|:.:..||.:.|  |..:.:|..|   |..:|..|||
Mouse   391 --PASTLRKGDGVPV--PVPNRLAVSGTLAGQQAGNRPGP 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
osaNP_001163639.1 BRIGHT 1001..1092 CDD:128777 42/91 (46%)
DUF3518 2191..2451 CDD:288854
Arid3bNP_001366282.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..174 44/199 (22%)
Interaction with RB1. /evidence=ECO:0000250 201..374 65/192 (34%)
ARID_ARID3B 202..327 CDD:350643 52/143 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 378..403 6/27 (22%)
Interaction with ARID3A. /evidence=ECO:0000250 495..518
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 529..568
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1374
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
32.900

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