DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment osa and arid3a

DIOPT Version :9

Sequence 1:NP_001163639.1 Gene:osa / 42130 FlyBaseID:FBgn0261885 Length:2716 Species:Drosophila melanogaster
Sequence 2:NP_001011106.1 Gene:arid3a / 496519 XenbaseID:XB-GENE-945264 Length:541 Species:Xenopus tropicalis


Alignment Length:540 Identity:132/540 - (24%)
Similarity:192/540 - (35%) Gaps:137/540 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   831 QSQMLQGGQPQGQGASG-GPESGGPEHISQDNGISSSGPTGAAGMHAVTSVVTTGPDGTSMDE-- 892
            |....:|..|...|..| |.|...||.:.    |..:.....|.|.|..:.::..|...:.||  
 Frog    28 QQDSSEGRTPPSVGYPGNGSEEAEPEALK----IQRAQAAALAAMRAAAAGLSQQPSPAASDEEE 88

  Fly   893 ---VSQQSTLSNASAASGEDPQCTTPKSRKND---PYSQSHLAPPSTSPHPVVMHPGGGPGEEYD 951
               .|..|...:.....||..:.....|.:.|   .:.:..............|..|.|..|...
 Frog    89 EDGESMASDEEDEKERDGESERYPDMGSEEEDLKGKWDEDDFEDEGEEDDYEDMEEGMGVSEAGR 153

  Fly   952 MSS----PPNWPRP------------------AGSPQVFNHVP-VPQEPFRSTITTTKKSDSLCK 993
            :..    ||..|.|                  .|.||:.:|.. ..:|.|:             :
 Frog   154 VGKGSTLPPKHPNPQAFPTQRSVGAERAGLPHTGHPQLQDHGDWTYEEQFK-------------Q 205

  Fly   994 LYEMDDNPDRRGWLDKLRAFMEERRTPITACPTISKQPLDLYRLYIYVKERGGFVEVTKSKTWKD 1058
            |||:|.:|.|:.:||.|.:||::|.||:...|.::||.||||.||:.|.|:||.|||...|.|::
 Frog   206 LYELDGDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLYMLYVLVTEKGGLVEVINKKLWRE 270

  Fly  1059 IAGLLGIGAS-SSAAYTLRKHYTKNLLTFECHFDRGDIDPLPIIQQVEA----GSKKKTAKAASV 1118
            |...|.:..| :|||:|||..|.|.|..:||. .||..:|..:...:::    |.::....:...
 Frog   271 ITKGLNLPTSITSAAFTLRTQYMKYLYPYECE-KRGLSNPNELQAAIDSNRREGRRQSFGGSLFT 334

  Fly  1119 PSPGG------------GHLDAGTTNSTGSS-----------NSQDSFPAPPG------------ 1148
            .||.|            ..|..|...:.|||           :|..|...||.            
 Frog   335 YSPSGAPSMLSSPKLQVSALSLGGVATNGSSLSSMQKIKKEEDSPISLTVPPRIPVSLAGHSMVA 399

  Fly  1149 ---SAPNAAIDGYPGYPGGSPYPVASGPQPDYATA------GQMQRPPSQN----NPQTP----- 1195
               :|..||::..       ...:.||..|:...|      .::||....|    ..|.|     
 Frog   400 AQVAAQAAALEQL-------REKLESGEPPEKKMALGTEEQQRLQRAIQHNLLAMTAQLPMNIRI 457

  Fly  1196 -------HPGAAAAVAAGDN-ISVSNPFEDPIAAGGGPGSGTGPGPGQGP--GPGAASGGAGAVG 1250
                   ...|......|.| ||:|......:.        ||....|.|  ..|.:.|.:...|
 Frog   458 NSQAEGRQDSAVNLTTNGTNSISMSVELNGIVY--------TGVLFAQPPTSASGTSKGSSNRTG 514

  Fly  1251 AVGGG---PQPHPPP-PHSP 1266
            ::|||   .|..||| |.:|
 Frog   515 SIGGGSSTSQAAPPPAPSAP 534

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
osaNP_001163639.1 BRIGHT 1001..1092 CDD:128777 42/91 (46%)
DUF3518 2191..2451 CDD:288854
arid3aNP_001011106.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 17..172 30/147 (20%)
ARID_ARID3A 193..325 CDD:350642 53/145 (37%)
Important for nuclear localization. /evidence=ECO:0000250 408..450 8/48 (17%)
Homodimerization. /evidence=ECO:0000250 452..473 2/20 (10%)
Important for cytoplasmic localization. /evidence=ECO:0000250 497..504 2/6 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 499..541 13/36 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1374
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

Return to query results.
Submit another query.