DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment osa and retn

DIOPT Version :9

Sequence 1:NP_001163639.1 Gene:osa / 42130 FlyBaseID:FBgn0261885 Length:2716 Species:Drosophila melanogaster
Sequence 2:NP_788434.1 Gene:retn / 45976 FlyBaseID:FBgn0004795 Length:911 Species:Drosophila melanogaster


Alignment Length:935 Identity:210/935 - (22%)
Similarity:284/935 - (30%) Gaps:365/935 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   633 GGYKMGGPGQSPGAQGYPPQQPQQYPPGNYPPRPQYPPGAYATGPPPPPTSQAGAGGANSMPS-- 695
            ||   ||...||..|...|.......|.|:|        ..|.|      |..|.||.:|:|:  
  Fly    68 GG---GGSFASPEPQTELPLSHHHQLPPNHP--------LNALG------SFMGIGGLHSIPNLQ 115

  Fly   696 -------------GAQAGGYPGRGMPNHTGQYPPYQWVPPSPQQTVPGGAPGGAMVGNHVQGKGT 747
                         ..:.|                      ..:|.....|...|...|.:     
  Fly   116 HSDVLEKLKMQVRDMKVG----------------------LMEQDYAAAAHAAAFGANML----- 153

  Fly   748 PPPPVVGGPPPPQGSGSPRPLNYLKQHLQHKGGYGGSPTPPQGPQG--YGNGPTGMHPGMPMGPP 810
                     |....||.|.|.|.:        .:|...:.|.|..|  |..|.|           
  Fly   154 ---------PTTISSGFPLPHNSV--------AFGHVTSSPSGGNGSSYNGGTT----------- 190

  Fly   811 HHMGPPHGPTNMGPPTSTPPQSQMLQGGQPQGQGASGGPESGGPEHISQDNGISSSGPTGAAGMH 875
                    |||.....:|      ..||...|.|.:||  |||       .|....|..|..|.|
  Fly   191 --------PTNSSNSNAT------TNGGGTAGPGGTGG--SGG-------GGGGGGGGGGGVGGH 232

  Fly   876 AVTSVVTTGPDGTSMDEVSQQSTLSNASAASGEDPQCTTPKSRKNDPYSQSHLAPPSTSPHPVVM 940
                               |.|..|..:|.||::.:               |.|..|.|      
  Fly   233 -------------------QFSFASPTAAPSGKEAR---------------HFAANSAS------ 257

  Fly   941 HPGGGPGEEYDMSSPPN--WPRPAGSPQVFNHVPVPQEPFRSTITTTKKSDSLCKLYEMDDNPDR 1003
              ......|...||..|  |..              :|.|:          .:.:|||::|:|.|
  Fly   258 --NSSTSSEASNSSQQNNGWSF--------------EEQFK----------QVRQLYEINDDPKR 296

  Fly  1004 RGWLDKLRAFMEERRTPITACPTISKQPLDLYRLYIYVKERGGFVEVTKSKTWKDIAGLLGIGAS 1068
            :.:||.|.:||::|.|||...|.::|..||||.||..|..|||.|:|...|.|::|...|.:.:|
  Fly   297 KEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSS 361

  Fly  1069 -SSAAYTLRKHYTKNLLTFECHFDRGDIDPLPIIQQVEAGSKKKTAKAASVPSPGGGHLDAGTTN 1132
             :|||:|||..|.|.|..:||                   .||..:..|.:.:...|:...|..:
  Fly   362 ITSAAFTLRTQYMKYLYPYEC-------------------EKKNLSTPAELQAAIDGNRREGRRS 407

  Fly  1133 STGSSNS-QDSFPAPPGSAPNAAIDGYPGYPGG----SPYPVASGPQPDYATAGQMQRPPSQNNP 1192
            |.|...: .:..|..|.|.|:        .|||    ||..:.:     :|...        ||.
  Fly   408 SYGQYEAMHNQMPMTPISRPS--------LPGGMQQMSPLALVT-----HAAVA--------NNQ 451

  Fly  1193 QTPHPGAAAAVAAGDNISVSNPFEDPIAAGGGPGSGTGPG--------------------PGQGP 1237
            |.  ..||||.||...:.            |.|..|..|.                    ..||.
  Fly   452 QA--QAAAAAAAAHHRLM------------GAPAFGQMPNLVKQEIESRMMEYLQLIQAKKEQGM 502

  Fly  1238 GPGAASGGAGAVGAVGGGPQPHPPPPHSPHTAAQQAAGQH----QQQHPQHQH-----------P 1287
            .|            |.||..||    ...|:..||....|    |||..|.||           |
  Fly   503 PP------------VLGGNHPH----QQQHSQQQQQQQHHHQQQQQQQSQQQHHLQQQRQRSQSP 551

  Fly  1288 GLP-------------------GPP-----PPQQQQGQQGQQPPPSVGG---------------- 1312
            .|.                   .||     .|||::.......||::..                
  Fly   552 DLSKHEALSAQVALWHMYHNNNSPPGSAHTSPQQREALNLSDSPPNLTNIKREREREPTPEPVDQ 616

  Fly  1313 ------GPPPAPQQHGPGQVPP--------SPQQ--HVRPAAGAPYPPGGSGYPTPVSRTPGSPY 1361
                  .|||| ::.|.|.:||        :|..  .|..|||..:|..|..........|...|
  Fly   617 DDKFVDQPPPA-KRVGSGLLPPGFPANFYLNPHNMAAVAAAAGFHHPSMGHQQDAASEGEPEDDY 680

  Fly  1362 PSQPGAYGQYGSSDQYNATGPPGQPFGQGPGQYPPQNRNMYPPYGPEGE-APPTGANQYGPYGSR 1425
                 |:|::.::...::.....:| .|..|.:..|..::........| :|.|.....|..|.|
  Fly   681 -----AHGEHNTTGNSSSMHDDSEP-QQMNGHHHHQTHHLDKSDDSAIENSPTTSTTTGGSVGHR 739

  Fly  1426 ---PYS-------QPPPGGPQPPTQ 1440
               |.|       :|..||...||:
  Fly   740 HSSPVSTKKKGGAKPQSGGKDVPTE 764

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
osaNP_001163639.1 BRIGHT 1001..1092 CDD:128777 41/91 (45%)
DUF3518 2191..2451 CDD:288854
retnNP_788434.1 BRIGHT 294..386 CDD:128777 42/110 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 58 1.000 Domainoid score I3936
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1374
SonicParanoid 00.000 Not matched by this tool.
32.940

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