DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment osa and arid-1

DIOPT Version :9

Sequence 1:NP_001163639.1 Gene:osa / 42130 FlyBaseID:FBgn0261885 Length:2716 Species:Drosophila melanogaster
Sequence 2:NP_001300004.1 Gene:arid-1 / 4363100 WormBaseID:WBGene00044689 Length:1648 Species:Caenorhabditis elegans


Alignment Length:648 Identity:128/648 - (19%)
Similarity:193/648 - (29%) Gaps:235/648 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   549 QQPPVGAGGPPPMPPHPGMPGGPPQQQQSQQ---------QQASNSASS----ASNSPQQTPPPA 600
            |:|...|..        .:.||..:.::.::         ::|.....|    ..:..|::||..
 Worm  1115 QKPDTSAAA--------AVNGGKSESEEEEEEKTVVMGGDEEAEEEVKSEDVLVESVDQESPPTT 1171

  Fly   601 PPPNQGMNNMATPPPPPQGAAGGGYPMPPHMHGGYKMGGPGQSPGAQGYPPQQPQQYPPGNYPPR 665
               :||...       |:.||.||..                                  :....
 Worm  1172 ---SQGTTT-------PETAATGGLE----------------------------------SESDE 1192

  Fly   666 PQYPPGAYATGPPP-------PPTSQAGAGGANSMPSGAQAGGYPGRGMPNHTGQYPPYQWVPPS 723
            |:|||......|||       |.|.:..:||:::.|:.::.|.......|    .:.|...:..|
 Worm  1193 PEYPPVPEELVPPPPVLLENFPSTDRFSSGGSSNYPTLSRQGSINSMASP----MFSPNSDLSLS 1253

  Fly   724 PQQTVPGGAPGGAMVGNHVQGKGTPPPPVVGG-----------------PPPPQGS--------G 763
            ...|:|...|   :...:::...| |..|||.                 ||||..:        .
 Worm  1254 GPLTLPRSGP---LTMANIRQSPT-PDEVVGSLRKRLSQTSESSESSELPPPPSAASKSKRIRRA 1314

  Fly   764 SPRPLNYLKQH-----------LQHKGG---YGGSPTPPQGPQG--------------------- 793
            |.|.::...:|           .||..|   :..|.|.|....|                     
 Worm  1315 SERSIDSASEHHRMMRSPRILTTQHSSGALIFDISTTQPTDTSGPIEALSVRKPGRRKTVFAASP 1379

  Fly   794 --YGNGPTGMHPGMPMGPPHHMGPP-HGPTNMGPPTSTPPQSQMLQGGQPQGQGASGGPESGGPE 855
              ..:||..:....|..||....|| |....:|.|..||..|                  |..||
 Worm  1380 TLLTSGPLTLSSSAPPPPPASPAPPQHAQKTLGRPRKTPSTS------------------SRKPE 1426

  Fly   856 HISQDNGISSSGPTGAAGMHAVTSVVTTGPDGTSMDEVSQQSTLSNASA---ASGEDPQCTTPKS 917
            ...:...|    ||...|                   |:::::::::||   .:.||.. .||:.
 Worm  1427 EEDEAEQI----PTTVVG-------------------VTEEASVADSSAKEDLTSEDGS-ATPQD 1467

  Fly   918 RKNDPYSQSHLAPPSTSPHPV---VMHPGGGP-GEEYDM--SSPPNWPR-PAGSPQVFNHVPVPQ 975
            .|:|  |:|.....:.:|..:   ....|||. |..|.:  :.|...|: |..........|..|
 Worm  1468 EKDD--SESTTTTDTITPKSIRGGKRRRGGGRFGGSYPVKPAKPGRKPKDPHAEEGADEKDPEDQ 1530

  Fly   976 EPFRSTITTTKKSDS-------LCKL-------YEMDDNPDRRGWLDK---------LRAFMEER 1017
            .|...|.:|..::||       :.||       |...|.||    .||         :...||||
 Worm  1531 TPTTMTTSTPTRADSFQTQKNRMAKLMEGKPHDYSFLDLPD----FDKIIEEAPKEDINILMEER 1591

  Fly  1018 ----RTPITACPTISKQPLDLYRLYIYVKERGGFVEVTKSKTWKDIAGLLGIGASSSAAYTLR 1076
                |.....|..........||.....|.:..|...|.|..       ....||||...|.|
 Worm  1592 TYELREIFAQCKADLSALEKRYRQQNEAKRKAEFAAKTASSA-------AAAQASSSTCSTPR 1647

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
osaNP_001163639.1 BRIGHT 1001..1092 CDD:128777 22/89 (25%)
DUF3518 2191..2451 CDD:288854
arid-1NP_001300004.1 ARID 658..740 CDD:198082
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1374
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

Return to query results.
Submit another query.