DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment osa and arid3b

DIOPT Version :9

Sequence 1:NP_001163639.1 Gene:osa / 42130 FlyBaseID:FBgn0261885 Length:2716 Species:Drosophila melanogaster
Sequence 2:XP_004916060.1 Gene:arid3b / 100496484 XenbaseID:XB-GENE-1018456 Length:548 Species:Xenopus tropicalis


Alignment Length:385 Identity:104/385 - (27%)
Similarity:147/385 - (38%) Gaps:107/385 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   790 GPQGYGNGPTGMHPGMPMGPPHHMGPPHGPTNMGPPTSTPPQSQMLQGGQPQGQGASGGPESGGP 854
            ||....:|.|    .:|:||||....|.....|                  .|.|:         
 Frog    85 GPSPNSSGRT----RLPVGPPHSASDPEDDDEM------------------DGDGS--------- 118

  Fly   855 EHISQDNGISSSGPTGAAGMHAVTSVVTTGPDGTSMDE--VSQQSTLSNASAASGEDPQCTTPKS 917
                 |:|.|......:...|           ||::.:  :..|..|...|..:.:..|...|.:
 Frog   119 -----DDGDSYEEREDSREAH-----------GTTLAQKYLQAQRELQGISVPNRQGTQNHRPLT 167

  Fly   918 RKNDPYSQSHLAPPSTSPHPVVMHPGGGPGEEYDMSSPPNW-PRPAGSPQVFNHVPVPQEPFRST 981
            .|.:|..::..|.|. :.|...|       ||:......:| ..|.|               ||.
 Frog   168 VKEEPAEENFNASPG-NLHKQNM-------EEHIKQENSSWCEDPDG---------------RSR 209

  Fly   982 ITTTKKSDSLCKLYEMDDNPDRRGWLDKLRAFMEERRTPITACPTISKQPLDLYRLYIYVKERGG 1046
            .|    |....||||:|.:|.|:.:||.|..||:::.|||:..|.::||.||||.||..|.|:||
 Frog   210 ET----SRDFAKLYELDSDPKRKEFLDDLFMFMQKKGTPISRIPIMAKQLLDLYMLYKLVTEKGG 270

  Fly  1047 FVEVTKSKTWKDIAGLLGIGAS-SSAAYTLRKHYTKNLLTFECHFDRGDIDPLPIIQQVEAGSKK 1110
            .|||...|.|::|...|.:..| :|||:|||..|.|.|..:||                   .||
 Frog   271 LVEVINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYLYEC-------------------EKK 316

  Fly  1111 KTAKAASVPSPGGGHLDAGTTNSTGSSNSQDSFPAPPGSAPNAAIDGYPGYPGGSPYPVA 1170
            ..:..|.:.:...|:...|...|.|||....| |.|.|::         |..|.:..|||
 Frog   317 SLSSPAELQAAIDGNRREGRRPSYGSSTFSYS-PTPQGTS---------GLLGANKVPVA 366

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
osaNP_001163639.1 BRIGHT 1001..1092 CDD:128777 42/91 (46%)
DUF3518 2191..2451 CDD:288854
arid3bXP_004916060.1 BRIGHT 225..314 CDD:128777 42/107 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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