DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG14325 and Nod1

DIOPT Version :10

Sequence 1:NP_650641.2 Gene:CG14325 / 42123 FlyBaseID:FBgn0038531 Length:460 Species:Drosophila melanogaster
Sequence 2:NP_001102706.1 Gene:Nod1 / 500133 RGDID:1562269 Length:953 Species:Rattus norvegicus


Alignment Length:505 Identity:97/505 - (19%)
Similarity:185/505 - (36%) Gaps:147/505 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 FNLTDVKLPKV--GDKSVDTIQIPSEDQEDQTNQAKSLRHLVLDSIVENWSELPLYRQLGRREDR 83
            |...:|:..|:  ||..:..::...:...:|:.|:....||.|.:....:               
  Rat   478 FGQEEVQASKLQEGDLQLGFLRALPDVGPEQSQQSYEFFHLTLQAFFTAF--------------- 527

  Fly    84 NYLLSHLDTQLPLQLLSAHIRE--------------DFFWQRCYGHRWRSAP------------- 121
             :|::  |.::..|.|....||              .||..:|.|...|..|             
  Rat   528 -FLVA--DDKVSTQELLRFFREWTSPGEATSRSCYPSFFSFQCLGSGSRLGPDPFKNKDHFQFTN 589

  Fly   122 -----LQARGRER------P-----------WINIYMERHVQEFIENMPTGDYEQDGNVQV---- 160
                 |.|:.|::      |           |.:::..  ::.:::::|.  .:.||..||    
  Rat   590 LFLCGLLAKARQKLLQQLVPKAILRKKRKALWAHLFAS--LRSYLKSLPR--VQSDGFNQVHAMP 650

  Fly   161 ---------------------VLDICAAYINQLEISFLQPAPPTTDA--------NDHIPLDYLL 196
                                 ...|.|.|   |:::|.........|        :..:.||...
  Rat   651 TFLWMLRCIYETQSQKVGRLAARGISADY---LKLAFCNACSADCSALSFVLHHFHRQLALDLDN 712

  Fly   197 SNLPD--LRQLRLSYSTKTVGCNYQMGCNQLTVRDILHLTKGLSQCHELRTFC-LHNTKLMPYQL 258
            :||.|  :|:|:..:|..||   .::..||:|...:..|.:.|:: :::.||. |:|.::.....
  Rat   713 NNLNDYGVRELQPCFSRLTV---IRLSVNQITDMGVKVLCEELTK-YKIVTFLGLYNNQITDIGA 773

  Fly   259 RFLAHSLDKGCHHLTEMSLLHCAVGDAGIRCFLETCGKESFGTLTVLDLTNNKITEEGAYILSRT 323
            |::|..||: |..||.:.|....:...|.||..:.....:  ::..:.:..|:|.:|||...:..
  Rat   774 RYVAQILDE-CRGLTHLKLGKNRITSEGGRCVAQAVKNST--SIVEVGMWGNQIGDEGAKAFAEA 835

  Fly   324 LR-HVPLEKLVLRLNPIQSDGAAAIFNTLQVMPIKELDLGTCGITETITKLFMMLICQHTSLLEI 387
            || |..|..|.|..|.|..:|..::...|:                           |:|:|..|
  Rat   836 LRDHPSLTTLSLAFNGISPEGGKSLAQALK---------------------------QNTTLTII 873

  Fly   388 DLSNNSLGEDFGKHLMKIISCNKLLERLDLRNTGLSLDMRRKFQEFLLKN 437
            .|:.|.|.::..:...:::..|:.|:.|.|....::.:...:....|.||
  Rat   874 WLTKNELNDEAAECFAEMLRVNQTLKHLWLIQNHITAEGTAQLARALQKN 923

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG14325NP_650641.2 RNA1 <185..434 CDD:444072 57/260 (22%)
leucine-rich repeat 202..239 CDD:275380 10/36 (28%)
leucine-rich repeat 240..271 CDD:275380 9/31 (29%)
leucine-rich repeat 272..301 CDD:275380 6/28 (21%)
leucine-rich repeat 302..326 CDD:275380 7/24 (29%)
leucine-rich repeat 329..353 CDD:275380 7/23 (30%)
leucine-rich repeat 356..383 CDD:275380 1/26 (4%)
leucine-rich repeat 384..407 CDD:275380 5/22 (23%)
Nod1NP_001102706.1 DD 21..104 CDD:472698
NACHT 190..>542 CDD:444362 14/81 (17%)
NACHT 197..367 CDD:428606
NLRC4_HD2 517..665 CDD:465499 25/169 (15%)
RNA1 <730..950 CDD:444072 51/228 (22%)
leucine-rich repeat 730..757 CDD:275380 7/30 (23%)
leucine-rich repeat 758..785 CDD:275380 9/27 (33%)
leucine-rich repeat 786..813 CDD:275380 6/28 (21%)
leucine-rich repeat 814..841 CDD:275380 8/26 (31%)
leucine-rich repeat 842..869 CDD:275380 8/53 (15%)
leucine-rich repeat 870..897 CDD:275380 6/26 (23%)
leucine-rich repeat 898..925 CDD:275380 6/26 (23%)
leucine-rich repeat 926..946 CDD:275380
Blue background indicates that the domain is not in the aligned region.

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