DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG14325 and nod1

DIOPT Version :10

Sequence 1:NP_650641.2 Gene:CG14325 / 42123 FlyBaseID:FBgn0038531 Length:460 Species:Drosophila melanogaster
Sequence 2:XP_002937900.2 Gene:nod1 / 100488164 XenbaseID:XB-GENE-990766 Length:945 Species:Xenopus tropicalis


Alignment Length:217 Identity:56/217 - (25%)
Similarity:89/217 - (41%) Gaps:36/217 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   237 LSQCHELRTFCLHNTKLMPYQLRFLAHSLDKGCHHLTEMSLLHCAVGDAGIRCFLETCGKESFGT 301
            |:..|:.....|.|..:..|.::.|.....|    ||.:.|....:.|.|.:...|...|  :..
 Frog   691 LNHYHKKIALELDNNNINDYGVKELIPCFSK----LTVIRLSVNQITDEGAKVLYEELTK--YKV 749

  Fly   302 LTVLDLTNNKITEEGAYILSRTLRHVP-LEKLVLRLNPIQSDGAA----AIFNTLQVMPI----K 357
            :|.|.|..|.||:.||..::|.:...| |:::.|..|....:|..    ||.|:..:..|    .
 Frog   750 ITFLGLYKNLITDFGAQFIARIIEECPKLKRVKLGYNRFTGEGGTYIGRAILNSTSICDIGMWGN 814

  Fly   358 EL-DLGTCGITETITK----LFMMLIC----------------QHTSLLEIDLSNNSLGEDFGKH 401
            |: |:|.|...|.||.    ..:.|.|                |:|||..:.|:.|.|.::..:|
 Frog   815 EIGDVGACAFAEAITNHSSLTHLSLACNGISTEGGKSIAEALQQNTSLKILWLTENKLTDEAAEH 879

  Fly   402 LMKIISCNKLLERLDLRNTGLS 423
            ..|::..||.|..|.|.|..::
 Frog   880 FAKMVKVNKTLRHLWLVNNQIT 901

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG14325NP_650641.2 RNA1 <185..434 CDD:444072 56/217 (26%)
leucine-rich repeat 202..239 CDD:275380 1/1 (100%)
leucine-rich repeat 240..271 CDD:275380 6/30 (20%)
leucine-rich repeat 272..301 CDD:275380 7/28 (25%)
leucine-rich repeat 302..326 CDD:275380 9/23 (39%)
leucine-rich repeat 329..353 CDD:275380 7/27 (26%)
leucine-rich repeat 356..383 CDD:275380 11/51 (22%)
leucine-rich repeat 384..407 CDD:275380 6/22 (27%)
nod1XP_002937900.2 DD 22..104 CDD:472698
NACHT 188..>538 CDD:444362
NACHT 195..366 CDD:428606
NLRC4_HD2 514..657 CDD:465499
leucine-rich repeat 673..696 CDD:275381 1/4 (25%)
RNA1 <700..938 CDD:444072 54/208 (26%)
leucine-rich repeat 722..746 CDD:275380 6/23 (26%)
leucine-rich repeat 750..777 CDD:275380 9/26 (35%)
leucine-rich repeat 778..805 CDD:275380 7/26 (27%)
leucine-rich repeat 806..833 CDD:275380 8/26 (31%)
leucine-rich repeat 834..861 CDD:275380 3/26 (12%)
leucine-rich repeat 862..885 CDD:275380 6/22 (27%)
leucine-rich repeat 890..917 CDD:275380 4/12 (33%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.