DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sll and UTR2

DIOPT Version :10

Sequence 1:NP_524389.1 Gene:sll / 42115 FlyBaseID:FBgn0038524 Length:465 Species:Drosophila melanogaster
Sequence 2:NP_001190806.1 Gene:UTR2 / 828400 AraportID:AT4G23010 Length:392 Species:Arabidopsis thaliana


Alignment Length:369 Identity:86/369 - (23%)
Similarity:154/369 - (41%) Gaps:103/369 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 QLLWCFGGLMISYLTWGVLQEKIMTQNYLNFTGESAKFKDSQFLVFSNRLLAFLVALAYLQWQP- 207
            |.|.|..|....||..||.:|.:..:...:|        ...|......:..||:   |||... 
plant    22 QFLICTSGFFFGYLVNGVCEEYVYNRLQFSF--------GWYFTFIQGFVYLFLI---YLQGFTT 75

  Fly   208 ----SPVRHRAPLYKYSYASFSNIM--SAWFQYEALKFVNFPTQVLAKSCKIIPVMLMGKIMS-- 264
                :|:|        :|...|.::  |......:|.::|:|.|::.||.|::|||:||..:.  
plant    76 KHIVNPMR--------TYVKLSAVLMGSHGLTKGSLAYLNYPAQIMFKSTKVLPVMIMGAFIPGL 132

  Fly   265 KAKYESYEYVTALLISLGMIFFMSGSSDSSKASGVTTLTGIFLLSMYMVFDSFTANWQGSLFKSY 329
            :.||..:||::|.|:.||:|.|....:..|..   .::.||.:::..::.|:|..|.|.::|.  
plant   133 RRKYPVHEYISAFLLVLGLILFTLADAQMSPN---FSMIGIMMITGALIMDAFLGNLQEAIFT-- 192

  Fly   330 GMTP----LQMM-CGV-------------------------------------NL---FSS---- 345
             |.|    ::|: |..                                     ||   |.|    
plant   193 -MNPETTQMEMLFCSTVVGLPFLFVPMVLTGEVFRAWTACAQSSILSESDKEWNLLFGFESTSID 256

  Fly   346 -----IFTGASLSMQG-----GFMDSLAFATEHPKFVFDMVVL-SVCSAVGQLFIYHTIDVFGPV 399
                 |.||..||::.     ||:        || :|:.::|. ::.:.:||:.:...|.:||..
plant   257 LTRFMIQTGVGLSLEKKSKFVGFL--------HP-YVYGVLVFEAMATFIGQVSVLSLIALFGAA 312

  Fly   400 VFTIIMTLRQAVAIMLSCFIYQHSISLLGIFGVLIVFVAIFLRV 443
            ...:|.|.|:.|.::||..|:...::.....|:|::.:.|.|::
plant   313 TTALITTARKGVTLLLSYLIFTKPLTEQHGSGLLLIAMGIVLKM 356

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sllNP_524389.1 UAA 144..444 CDD:462479 86/369 (23%)
UTR2NP_001190806.1 UAA 22..359 CDD:462479 86/369 (23%)

Return to query results.
Submit another query.